Skip to main content

Table 5 ESTs and the plausible functions in the homologous ESTs outlier loci among populations

From: SNP-revealed genetic diversity in wild emmer wheat correlates with ecological factors

SNP marker and EST

Gene function and homologus EST

  

Code

SNP markers

Map position

Function

Accession no.

Identity

E-value

Outlier 1

BE605063_1_A_Y_252

1A

Uncharacterized LOC100821025, B. distachyon

XM_003574117.1

89%

0

Outlier 2*

BE494527_1_A_Y_449

1AL1-0.17-0.61

Phosphoethanolamine methyltransferase, T. aestivum

AY065971.1

96%

3e-86

Outlier 3

BG314205_1_B_33

C-1BL6-0.32

Uncharacterized LOC100839226, B. distachyon

XM_003574093.1

86%

0

Outlier 4

BE637971_1_B_Y_181

1BS.sat18-0.50-1.00

Uncharacterized LOC100831964, B. distachyon

XM_003573654.1

85%

2e -108

Outlier 5

BE443797_1_B_436

1BS10-0.50-0.84

26S proteasome non-ATPase regulatory subunit 13-like, B. distachyon

XM_003574348.1

89%

0

Outlier 6

BE445242_2_A_362

C-2AS5-0.78

Uncharacterized LOC100842418, B. distachyon

XM_003562526.1

90%

0

Outlier 7*

BE518440_2_A_Y_187

2AS5-0.78-1.00

GTP-binding protein (GBP-1), T. aestivum

DQ489316.1

97%

0

Outlier 8

BE406351_2_A_Y_124

2A

Probable glycerophosphoryl diester phosphodiesterase 2, B. distachyon

XM_003579903.1

91%

4e-139

Outlier 9

BE406351_2_A_76

2A

Probable glycerophosphoryl diester phosphodiesterase 2, B. distachyon

XM_003579903.1

91%

4e-139

Outlier 10

BE404601_2_B_Y_66

C-2BS1-0.53

Uncharacterized LOC100826320, B. distachyon

XM_003562643.1

85%

4e1-15

Outlier 11

BE499362_2_B_Y_257

2B

Probable signal peptidase complex subunit 2-like, B. distachyon

XM_003579773.1

91%

0

Outlier 12

BG263769_3_A_Y_343

3A

Uncharacterized LOC100822853, B. distachyon

XM_003569549.1

92%

9e-151

Outlier 13

BE445508_3_B_Y_273

3B

Aegilopoides isolate D58c hypothetical protein, T. monococcum

HM539557.1

99%

0

Outlier 14

BE517914_3_B_340

3BL10-0.50-0.63

Ras-related protein RABE1a-like, B. distachyon

XM_003564523.1

94%

2e-178

Outlier 15

BE424246_3_B_131

3BL7-0.63-1.00

cDNA, clone: WT006_E06, T. aestivum

AK333352.1

99%

0

Outlier 16

BE517732_3_B_294

3BL7-0.63-1.00

KH domain-containing protein, B. distachyon

XM_003564748.1

82%

5e-141

Outlier 17

BE443973_4_A_Y_130

4AS1-0.20-0.63

Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1, 3-glucosyltransferase, B. distachyon

XM_003557947.1

90%

0

Outlier 18

BE443973_4_A_105

4AS1-0.20-0.63

Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1, 3-glucosyltransferase, B. distachyon

XM_003557947.1

90%

0

Outlier 19

BE490599_4_A_Y_132

C-4AL12-0.43

cDNA, clone: WT003_N17, cultivar: Chinese Spring, T. aestivum

AK332386.1

92%

2e-82

Outlier 20

BE497184_4_A_Y_109

C-4AL12-0.43

Putative methylsterol monooxygenase DDB_G0269788-like, B. distachyon

XM_003577145.1

91%

0

Outlier 21

BE591861_4_A_Y_848

C-4AS1-0.20

KH domain-containing protein At4g18375-like, B. distachyon

XM_003557826.1

90%

5e-174

Outlier 22

BE404717_4_A_Y_280

4AS4-0.63-0.76

Kelch motif family protein, Z. mays

NM_001155181.1

79%

5e-50

Outlier 23

BE446161_4_B_Y_162

4BL5-0.86-1.00

cDNA, clone: SET2_P19, T. aestivum

AK335999.1

99%

0

Outlier 24

BF482356_4_B_Y_504

4B

Ubiquitin carboxyl-terminal hydrolase 12-like, B. distachyon

XM_003577385.1

91%

3e-171

Outlier 25

BF482216_4_B_Y_57

4BL5-0.86-1.00

Endoribonuclease Dicer homolog 1-like, B. distachyon

XM_003558898.1

91%

0

Outlier 26

BE443538_5_A_1436

5AS1-0.40-0.75

Pollen-specific protein SF3-like, B. distachyon

XM_003575978.1

93%

0

Outlier 27

BG275060_6_A_Y_309

6AS1-0.35-0.65

Peroxisomal fatty acid beta-oxidation multifunctional protein, B. distachyon

XM_003572368.1

92%

0

Outlier 28

BE590521_6_B_N_331

C-6BL3-0.36

Adenine phosphoribosyltransferase 2-like, B. distachyon

XM_003575301.1

90%

4e-75

Outlier 29

BE498662_7_A_Y_513

7AS8-0.45-0.59

Pantothenate kinase 4, Z. mays

NM_001156082.1

87%

3e-137

Outlier 30*

BE488670_7_A_Y_73

7AL1-0.39-0.71

Spermidine synthase, T. aestivum

HQ121400.1

99%

0

Outlier 31

BF482529_7_A_304

7AL1-0.39-0.71

50S ribosomal protein L1-like, B. distachyon

XM_003563790.1

86%

8e-143

Outlier 32

BF292264_7_A_712

7AS1-0.89-1.00

GDT1-like protein, B. distachyon

XM_003574474.1

94%

4e-52

Outlier 33

BE518436_7_B_Y_671

7Bs

BRCA1-A complex subunit BRE-like, B. distachyon

XM_003563526.1

88%

3e-176

  1. Candidate loci from known genes of wheat were indicated by *.