From: SNP-revealed genetic diversity in wild emmer wheat correlates with ecological factors
SNP marker and EST | Gene function and homologus EST | Â | Â | |||
---|---|---|---|---|---|---|
Code | SNP markers | Map position | Function | Accession no. | Identity | E-value |
Outlier 1 | BE605063_1_A_Y_252 | 1A | Uncharacterized LOC100821025, B. distachyon | XM_003574117.1 | 89% | 0 |
Outlier 2* | BE494527_1_A_Y_449 | 1AL1-0.17-0.61 | Phosphoethanolamine methyltransferase, T. aestivum | AY065971.1 | 96% | 3e-86 |
Outlier 3 | BG314205_1_B_33 | C-1BL6-0.32 | Uncharacterized LOC100839226, B. distachyon | XM_003574093.1 | 86% | 0 |
Outlier 4 | BE637971_1_B_Y_181 | 1BS.sat18-0.50-1.00 | Uncharacterized LOC100831964, B. distachyon | XM_003573654.1 | 85% | 2e -108 |
Outlier 5 | BE443797_1_B_436 | 1BS10-0.50-0.84 | 26S proteasome non-ATPase regulatory subunit 13-like, B. distachyon | XM_003574348.1 | 89% | 0 |
Outlier 6 | BE445242_2_A_362 | C-2AS5-0.78 | Uncharacterized LOC100842418, B. distachyon | XM_003562526.1 | 90% | 0 |
Outlier 7* | BE518440_2_A_Y_187 | 2AS5-0.78-1.00 | GTP-binding protein (GBP-1), T. aestivum | DQ489316.1 | 97% | 0 |
Outlier 8 | BE406351_2_A_Y_124 | 2A | Probable glycerophosphoryl diester phosphodiesterase 2, B. distachyon | XM_003579903.1 | 91% | 4e-139 |
Outlier 9 | BE406351_2_A_76 | 2A | Probable glycerophosphoryl diester phosphodiesterase 2, B. distachyon | XM_003579903.1 | 91% | 4e-139 |
Outlier 10 | BE404601_2_B_Y_66 | C-2BS1-0.53 | Uncharacterized LOC100826320, B. distachyon | XM_003562643.1 | 85% | 4e1-15 |
Outlier 11 | BE499362_2_B_Y_257 | 2B | Probable signal peptidase complex subunit 2-like, B. distachyon | XM_003579773.1 | 91% | 0 |
Outlier 12 | BG263769_3_A_Y_343 | 3A | Uncharacterized LOC100822853, B. distachyon | XM_003569549.1 | 92% | 9e-151 |
Outlier 13 | BE445508_3_B_Y_273 | 3B | Aegilopoides isolate D58c hypothetical protein, T. monococcum | HM539557.1 | 99% | 0 |
Outlier 14 | BE517914_3_B_340 | 3BL10-0.50-0.63 | Ras-related protein RABE1a-like, B. distachyon | XM_003564523.1 | 94% | 2e-178 |
Outlier 15 | BE424246_3_B_131 | 3BL7-0.63-1.00 | cDNA, clone: WT006_E06, T. aestivum | AK333352.1 | 99% | 0 |
Outlier 16 | BE517732_3_B_294 | 3BL7-0.63-1.00 | KH domain-containing protein, B. distachyon | XM_003564748.1 | 82% | 5e-141 |
Outlier 17 | BE443973_4_A_Y_130 | 4AS1-0.20-0.63 | Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1, 3-glucosyltransferase, B. distachyon | XM_003557947.1 | 90% | 0 |
Outlier 18 | BE443973_4_A_105 | 4AS1-0.20-0.63 | Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1, 3-glucosyltransferase, B. distachyon | XM_003557947.1 | 90% | 0 |
Outlier 19 | BE490599_4_A_Y_132 | C-4AL12-0.43 | cDNA, clone: WT003_N17, cultivar: Chinese Spring, T. aestivum | AK332386.1 | 92% | 2e-82 |
Outlier 20 | BE497184_4_A_Y_109 | C-4AL12-0.43 | Putative methylsterol monooxygenase DDB_G0269788-like, B. distachyon | XM_003577145.1 | 91% | 0 |
Outlier 21 | BE591861_4_A_Y_848 | C-4AS1-0.20 | KH domain-containing protein At4g18375-like, B. distachyon | XM_003557826.1 | 90% | 5e-174 |
Outlier 22 | BE404717_4_A_Y_280 | 4AS4-0.63-0.76 | Kelch motif family protein, Z. mays | NM_001155181.1 | 79% | 5e-50 |
Outlier 23 | BE446161_4_B_Y_162 | 4BL5-0.86-1.00 | cDNA, clone: SET2_P19, T. aestivum | AK335999.1 | 99% | 0 |
Outlier 24 | BF482356_4_B_Y_504 | 4B | Ubiquitin carboxyl-terminal hydrolase 12-like, B. distachyon | XM_003577385.1 | 91% | 3e-171 |
Outlier 25 | BF482216_4_B_Y_57 | 4BL5-0.86-1.00 | Endoribonuclease Dicer homolog 1-like, B. distachyon | XM_003558898.1 | 91% | 0 |
Outlier 26 | BE443538_5_A_1436 | 5AS1-0.40-0.75 | Pollen-specific protein SF3-like, B. distachyon | XM_003575978.1 | 93% | 0 |
Outlier 27 | BG275060_6_A_Y_309 | 6AS1-0.35-0.65 | Peroxisomal fatty acid beta-oxidation multifunctional protein, B. distachyon | XM_003572368.1 | 92% | 0 |
Outlier 28 | BE590521_6_B_N_331 | C-6BL3-0.36 | Adenine phosphoribosyltransferase 2-like, B. distachyon | XM_003575301.1 | 90% | 4e-75 |
Outlier 29 | BE498662_7_A_Y_513 | 7AS8-0.45-0.59 | Pantothenate kinase 4, Z. mays | NM_001156082.1 | 87% | 3e-137 |
Outlier 30* | BE488670_7_A_Y_73 | 7AL1-0.39-0.71 | Spermidine synthase, T. aestivum | HQ121400.1 | 99% | 0 |
Outlier 31 | BF482529_7_A_304 | 7AL1-0.39-0.71 | 50S ribosomal protein L1-like, B. distachyon | XM_003563790.1 | 86% | 8e-143 |
Outlier 32 | BF292264_7_A_712 | 7AS1-0.89-1.00 | GDT1-like protein, B. distachyon | XM_003574474.1 | 94% | 4e-52 |
Outlier 33 | BE518436_7_B_Y_671 | 7Bs | BRCA1-A complex subunit BRE-like, B. distachyon | XM_003563526.1 | 88% | 3e-176 |