Table 1 Fourteen predicted HGT genes in the L. vannamei genome
From: Horizontally transferred genes in the genome of Pacific white shrimp, Litopenaeus vannamei
Symbol | Length | Typesa | Contig position | GenBank ID | Function | Top hit speciesb | Phylum | Accession GI | E-value | Identity | Coverage | Figures |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
acsf | 672 | B → L | Contig124858619: 312-944 | KC701594 | acetyl-coenzyme A synthetase family protein | Desulfotomaculum kuznetsovii | Chloroflexi | 667983253 | 5.00E-48 | 66.87 | 72.77% | Figure S1 |
rpsF | 395 | B → L | Contig124943021: 4082-4445 | KC701595 | 30S ribosomal protein S6 | Flavobacteriales bacterium | Bacteroidetes | 1163788026 | 6.00E-50 | 96.61 | 44.81% | Figure S2 |
rpsN | 593 | B → L | Contig5551: 3683-4206 | KC701598 | 50S ribosomal protein L21 | Gramella forsetii | Bacteroidetes | 1160887756 | 2.00E-58 | 79.31 | 88.03% | Figure S3 |
exbB | 522 | B → L | Contig124942315: 3448-3593 | KC701596 | biopolymer transport protein | Robiginitalea biformata | Bacteroidetes | 3320593070 | 1.00E-78 | 96.89 | 92.53% | Figure S4 |
mopB | 760 | B → L | Contig124944249: 1863-1980 | KC701597 | molybdopterin oxidoreductase, iron-sulfur binding subunit | Polaribacter irgensii | Firmicutes | 3336447549 | 5.00E-123 | 83.27 | 99.08% | Figure S5 |
tnpA | 352 | B → L | Contig5540: 2118-2468 | KC701599 | transposase | Escherichia Coli | Gama-proteobacteria | 269961834 | 1.00E-60 | 100 | 98.01% | Figure S6 |
stat | 784 | B → L | Contig124277025: 193-313 | KC701600 | streptomycin 3″-adenylyltransferase | Shigella flexneri | Gama-proteobacteria | 3331678336 | 8.00E-78 | 100 | 56.25% | Figure S7 |
rpc2 | 778 | B → L | Contig124717565: 157-356 | KC701601 | repressor protein C2 | Escherichia Coli | Gama-proteobacteria | 3333019710 | 6.00E-47 | 94.74 | 21.98% | Figure S8 |
dhfr | 692 | B → L | Contig124922462: 426-1117 | KC701602 | dihydrofolate reductase | Vibrio harveyi | Gama-proteobacteria | 3323184048 | 2.00E-52 | 69.57 | 69.80% | Figure S9 |
cata | 709 | B → L | Contig147675: 106-530 | KC701603 | chloramphenicol acetyltransferase | Bacteroides uniformis | Bacteroidetes | 1120437905 | 1.00E-81 | 100 | 59.24% | Figure S10 |
sdrp | 286 | B → L | Contig124657743: 33-616 | KC701604 | short-chain dehydrogenase/reductase SDR | Burkholderia phymatum | Beta-proteobacteria | 1186471973 | 3.00E-29 | 67.37 | 99.99% | Figure S11 |
omtp | 660 | B → A | Contig123317449: 1-217 | KC701605 | O-methyltransferase family protein | Francisella sp. | Gama-proteobacteria | 88802104 | 5.00E-23 | 44.65 | 72.27% | Figure 2 |
ankp | 955 | F → L | Contig124712867: 86-719 | KC701606 | ankyrin repeat-containing protein | Grosmannia clavigera | Ascomycota | 2260060705 | 2.00E-25 | 46.39 | 30.47% | Figure S12 |
deha | 761 | F → L | Contig121079137: 1-172 | KC701607 | DEHA2A03014p | Debaryomyces hansenii | Ascomycota | 294654414 | 8.00E-22 | 37.23 | 54.01% | Figure S13 |