Table 1 Bacterial features examined in this study
From: Transcriptional abundance is not the single force driving the evolution of bacterial proteins
Feature | Abbreviation | Type | Source |
|---|---|---|---|
Essentiality | ESS | binary | DEG |
Evolutionary rate (Ka) | ER | real | PAML |
Codon adaption index | CAI | real | Python script |
Expression level | EL | real | GEO |
mRNA folding strength | MFS | real | ViennaRNA |
Number of protein–protein associations | PPA | integer | STRING |
Subcellular localization: cytoplasm | SLC | real | PSORTb |
Subcellular localization: cytoplasmic membrane | SLM | real | |
Subcellular localization: periplasm | SLP | real | |
Subcellular localization: outer membrane | SLO | real | |
Subcellular localization: extracellular | SLE | real | |
Subcellular localization: cell wall | SLW | real | |
Number of transmembrane helices | TMH | integer | TMHMM |
Hydropathicity score | HS | real | CodonW |
Aromaticity score | AS | real | |
Length of protein in amino acids | LEN | integer | |
Replication strand bias | RSB | binary | DoriC |