|
Pop.
|
Paralog
|
# Hap.
|
πsyn
|
Ssyn
|
πnonsyn
|
Snonsyn
|
πsyn+nc
|
Ssyn+nc
|
Taj. D
|
Indels in coding region
|
|---|
|
SD
|
GOT1p1
|
6
|
0.06674
|
3
|
0
|
0
|
NA
|
NA
|
1.09
| |
| |
GOT1p2
|
10
|
0.04501
|
34
|
0.00675*
|
15
|
0.04359
|
34
|
0.21
|
70 bp insert (one haplotype)
|
| |
GOT1Sr
|
4
|
0
|
0
|
0
|
0
|
0.00076
|
5
|
0.372
| |
| |
GOT1Sd
|
10
|
0
|
0
|
0.00538*
|
5
|
0.00466
|
12
|
1.144
|
1bp fixed
|
| |
GOT1_6a
|
10
|
0.00742
|
4
|
0.00119
|
2
|
0.0057
|
4
|
1.06
|
1bp poly.
|
|
LJS
|
GOT1p1
|
6
|
0.02401
|
13
|
0.00195
|
4
|
NA
|
NA
|
0.74
| |
| |
GOT1p2
|
10
|
0.02296
|
29
|
0.00495
|
15
|
0.02223
|
29
|
−1.48
| |
| |
GOT1Sr
|
4
|
0.00186
|
1
|
0.00136
|
5
|
0.0008
|
5
|
−0.446
| |
| |
GOT1Sd
|
8
|
0.0163
|
6
|
0.00494*
|
5
|
0.00977
|
23
|
0.23
|
1bp poly.
|
| |
GOT1_6a
|
10
|
0.00211
|
1
|
0.00044
|
1
|
0.00092
|
0
|
0.12
| |
|
AB
|
GOT1p1
|
6
|
0.00111
|
1
|
0.0004
|
1
|
NA
|
NA
|
−1.13
| |
| |
GOT1p2
|
6
|
0.00412
|
3
|
0.00087
|
1
|
0.00399
|
3
|
0.56
| |
| |
GOT1Sr
|
4
|
0.00479
|
2
|
0.0023*
|
3
|
0.00102
|
4
|
1.06
|
(stop codon poly.)
|
| |
GOT1Sd
|
4
|
0
|
0
|
0.00287
|
2
|
0.00045
|
1
|
−0.754
| |
| |
GOT1_6a
|
10
|
0.00214
|
1
|
0.00043
|
1
|
0.00304
|
4
|
1.5
| |
|
SCN
|
GOT1p1
|
6
|
0.01356
|
8
|
0
|
0
|
NA
|
NA
|
0.27
| |
| |
GOT1p2
|
10
|
0.01774
|
14
|
0.00155
|
4
|
0.01747
|
14
|
−0.05
| |
| |
GOT1Sr
|
2
|
0
|
0
|
0
|
0
|
0.00122
|
6
|
NA
| |
| |
GOT1Sd
|
9
|
0.036
|
8
|
0.0123*
|
9
|
0.00632
|
9
|
0.672
|
4bp poly., 1bp poly., 4bp fixed
|
| |
GOT1_6a
|
8
|
0.016
|
11
|
0.0023
|
5
|
0.0165
|
14
|
−0.21
| |
- # Hap. indicates the number of haplotypes sequenced for each gene. S indicates the number of segregating sites for each type of polymorphism (syn-synonymous, non-syn-nonsynonymous, syn+nc-noncoding and synonymous). π gives the average pairwise sequence divergence for each of the same three catergories of sites. Taj. D is the value of Tajima’s D. Poly. indicates that site is polymorphic.
- *Note calculations of non-synonymous polymorphism correct reading frame caused by indels in coding region for comparison to other sequences.
