Evolution of the myosin heavy chain gene MYH14 and its intronic microRNA miR-499: muscle-specific miR-499 expression persists in the absence of the ancestral host gene

Bhuiyan, Sharmin Siddique; Kinoshita, Shigeharu; Wongwarangkana, Chaninya; Asaduzzaman, Md; Asakawa, Shuichi; Watabe, Shugo

doi:10.1186/1471-2148-13-142

Table 1 Gene IDs of MYH14 and miR-499 used in this study

From: Evolution of the myosin heavy chain gene MYH14 and its intronic microRNA miR-499: muscle-specific miR-499 expression persists in the absence of the ancestral host gene

Source	Gene	Database	ID	Position
Atlantic cod	MYH14	Ensembl	ENSGMOG00000012704	GeneScaffold92	21379-49726bp
Coelacanth	MYH14	Ensembl	ENSLACG00000018133	JH126566.1	2784820-286153bp
Green spotted puffer	MYH14-1	Ensembl	ENSTNIG00000007310	Chr11	10013139-10024708bp
Green spotted puffer	MYH14-2	Ensembl	ENSTNIG00000005523	Un_random	78966693-78979708bp
Stickleback	MYH14	Ensembl	ENSGACG00000000239	scaffold_114	38137-54868bp
Tilapia	MYH14-1	Ensembl	ENSONIG00000020306	GL831152.1	3238601-3253324bp
Tilapia	MYH14-2	Ensembl	ENSONIG00000014700	GL831175.1	1378557-1411608bp
Torafugu	MYH14-1(MYHM5)	Ensembl	ENSTRUG00000011087	scaffold_79	625079-637153bp
		DDBJ/EMBL/GenBank	AB235127
Torafugu	MYH14-2(MYHM3383)	Ensembl	ENSTRUG00000002856	scaffold_398	58536-75364bp
		DDBJ/EMBL/GenBank	AB235128
Zebrafish	MYH14-1	Ensembl	ENSDARG00000076075	Chr11	26116668-26147204bp
		DDBJ/EMBL/GenBank	JN216840
Zebrafish	MYH14-2	Ensembl	ENSDARG00000035322	Chr23	18893433-18927796bp
Zebrafish	MYH14-3	Ensembl	ENSDARG00000094982	Chr23	19118523-19145602bp
Platyfish	MYH14	Ensembl	ENSXMAG00000003166	Scaffold JH556788.1	1,000,495-1,020,944
Spotted gar	MYH14	Pre ensembl	-	LG18	9021426-9045727bp
Chicken	MYH14	Ensembl	ENSGALG00000003157	Chr20	2584788-2613111bp
Human	MYH14	Ensembl	ENSG00000078814	Chr20	33563206-33590240bp
Atlantic cod	miR-499	Ensembl	ENSGMOG00000021764	GeneScaffold2467	713672-713752bp
Coelacanth	miR-499	Ensembl	ENSLACG00000021819	JH126566.1	2848699-2848788bp
Green spotted puffer	miR-499	Ensembl	ENSTNIG00000020076	Chr11	10019969-10020055bp
Medaka	miR-499	Ensembl	ENSORLG00000020982	Chr5	26842790-26842873bp
Stickleback	miR-499	Ensembl	ENSGACG00000021407	GroupXVII	10484744-10484827bp
Tilapia	miR-499	Ensembl	ENSONIG00000021569	GL831152.1	3243791-3243884bp
Torafugu	miR-499	Ensembl	ENSTRUG00000018774	Scaffold79	632933-633021bp
Zebrafish	miR-499-1	Ensembl	ENSDARG00000080181	Chr11	26138712-26138802bp
Zebrafish	miR-499-2	Ensembl	ENSDARG00000081473	Chr23	18902040-18902117bp
Zebrafish	miR-499-3	Ensembl	ENSDARG00000087228	Chr23	19122484-19122561bp
Platyfish	miR-499	Ensembl	ENSXMAG00000020681	Scaffold JH556712.1	243,217-243,307
Spotted gar	miR-499	Pre ensembl	-	LG18	9034506-9034572bp
Chicken	miR-499	Ensembl	ENSGALG00000021774	Chr20	2599334-2599424bp
Human	miR-499	Ensembl	ENSG00000207635	Chr20	33578179-33578300bp

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ISSN: 2730-7182

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