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Table 4 Primers and annealing temperatures for qRT PCR

From: Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes

Organisms

Genes (°C)*

Primers

Achnenthes kuwaitensis

EFL (57)

5'-GTCACTTGATCTTCAAGCAG

 

5'-TGTCGGTGAAGAACTCCTTG

 

EF-1α (60)

5'-GAGGAGTTGACGAGAACACG

 

5'-TTGGAGACTCGAACTTCCAG

 

α-tubulin (60)

5'-TGGAGCCCTACAACTCCATC

 

5'-CACCAGGTTGGTCTGGAACTC

Asterionella glacialis

EFL (58)

5'-TATCTCTGAGCGTGAGATGAAG

 

5'-CTTGGTGTTGCACTGAATGG

 

EF-1α (54)

5'-TGAAGAACGAACTATGGAAG

 

5'-CCAAAGTGAAATATCGATTG

 

α-tubulin (58)

5'-ACATGGCATGCTGCCTCATG

 

5'-ATCCTCGAAAGAGCTTCTGC

Detonula confervacea

EFL (58)

5'-AGGAATCTCTGCTCGTGAG

 

5'-GAACTCCTTGGTGTTACACTG

 

EF-1α (58)

5'-GAAACCATCGACAAGTACG

 

5'-GAAACTTCCACAACGTGATATCG

 

α-tubulin (58)

5'-CAAATGCGCAGCGACAAGAC

 

5'-TTCCAGAACGGACCTCGTC

Thalassionema nitzschioides

EFL (56)

5'-AATCTCTGCTCGAGAGATGG

 

5'-TGTAGTGGTACTTGCCAGTG

 

EF-1α (56)

5'-CGTAGCCGAAAGCATAATAG

 

5'-CCAGACACTGATATCAATAG

 

α-tubulin (56)

5'-TTGTATGATGTCTGCCGTGG

 

5'-AAGCCTTCTCACGCGAAATA

Goniomonas sp.

EFL (60)

5’-CATCAAGGGTCTCAAGAAGGACAAC

 

5’-CAGTTGATGGCGGTCATCTTCATG

 

EF-1α (60)

5’-GTTCTCTGCTGGATACACTCCAGTG

 

5’-ACGCTATTCATGGAAGGCCTCAAC

 

α-tubulin (55)

5’-CATGTACCGTGGTGATGTCG

 

5’-CTGGACCTTGGCAAGATCAC

  1. *Numbers in parentheses show primer set-specific annealing temperatures used in qRT PCR.