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Table 3 Summary of the DNA divergence values for Trinidad and Mexico populations of (a) Colletotrichum gloeosporioides sensu lato and (b) C. truncatum

From: Genetic structure and demographic history of Colletotrichum gloeosporioides sensu lato and C. truncatum isolates from Trinidad and Mexico

  ACT GPDH β-TUB ITS
  Trinidad Mexico Trinidad Mexico Trinidad Mexico Trinidad Mexico
(a)
# polymorphic sites, S 54 42 35 94 5 38 58 25
Total # mutations, Eta 60 44 38 12 5 40 58 26
Theta (per site), S 0.109 0.085 0.062 0.288 0.004 0.039 0.033 0.015
Theta (per site), Eta 0.109 0.085 0.063 0.278 0.004 0.040 0.032 0.016
Theta (per site), Pi 0.044 0.079 0.036 0.206 0.009 0.039 0.012 0.015
Theta-W (per site) 0.087 0.074 0.054 0.178 0.004 0.037 0.031 0.015
Theta-W (per sequence) 13.631 11.839 8.912 26.496 1.273 10.711 14.769 7.047
Conservation threshold, CT 0.52 0.580 0.45 0.38 0.99 0.91 0.92 0.92
Ave. # nucleotide differences, k 6.49 11.168 4.778 24.111 2.557 10.063 5.414 7.132
Nucleotide diversity, Pi 0.042 0.072 0.035 0.162 0.009 0.037 0.011 0.015
Nucleotide diversity, Pi(JC) 0.045 0.081 0.036 0.221 0.009 0.039 0.012 0.016
Pairwise comparisons         
Ave # nucleotide differences, KT 8.833 13.432 6.541 6.366
Total nucleotide diversity, PiT 0.057 0.091 0.023 0.013
(b)
# polymorphic sites, S 4 6 0 1 0 10 0 3
Total # mutations, Eta 4 6 0 1 0 10 0 3
Theta (per site), S 0.008 0.009 0.000 0.002 0.000 0.016 0.000 0.002
Theta (per site), Eta 0.008 0.009 0.000 0.002 0.000 0.016 0.000 0.002
Theta (per site), Pi 0.012 0.006 0.000 0.002 0.000 0.009 0.000 0.001
Theta-W (per site) 0.008 0.009 0.000 0.002 0.000 0.016 0.000 0.002
Theta-W (per sequence) 1.543 2.121 0.000 0.353 0.000 3.535 0.000 1.060
Conservation threshold, CT 0.710 0.770 0.670 0.670 0.960 0.970 0.930 0.930
Ave. # nucleotide differences, k 2.286 0.2 0.000 0.356 0.000 1.800 0.000 0.756
Nucleotide diversity, Pi 0.012 0.001 0.000 0.002 0.000 0.013 0.000 0.002
Nucleotide diversity, Pi(JC) 0.012 0.001 0.000 0.002 0.000 0.014 0.000 0.002
Pairwise comparisons         
Ave # nucleotide differences, KT 5.758 0.209 36.765 1.268
Total nucleotide diversity, PiT 0.029 0.001 0.272 0.003