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Table 2 Mitochondrial (mtDNA) and nuclear (nucDNA) loci used in this study

From: A glimpse on the pattern of rodent diversification: a phylogenetic approach

Gene

Model

N taxa

N sites

12S rRNA [mtDNA]

GTR+I+Γ

391

724

Breast and ovarian cancer susceptibility protein exon 11 (BRCA1) [nucDNA]

TVM+I+Γ

99

2977

Control region (DLOOP) [mtDNA]

HKY+I+Γ

45

996

Cytochrome oxydase 3 (COX3) [mtDNA]

GTR+I+Γ

105

784

Cytochrome b (CYTB) [mtDNA]

GTR+I+Γ

1152

1140

Interphotoreceptor retinoid-binding protein exon 1 (RBP3) [nucDNA]

GTR+I+Γ

536

1302

Growth hormone receptor (GHR) exon 10 [nucDNA]

HKY+I+Γ

282

974

NADH dehydrogenase 4 (NADH4) [mtDNA]

GTR+I+Γ

99

1389

NADH dehydrogenase 1 (NADH1) [mtDNA]

TVM+I+Γ

45

961

Recombination activating protein 1 exon 1 (RAG1) [nucDNA]

GTR+I+Γ

238

3044

von Willebrand gene (vWF) exon 28 [nucDNA]

TrN+I+Γ

110

1272

  1. The abbreviated models are the following: HKY: Hasegawa, Kishino, Yano [79]; GTR: General Time Reversible [80, 81]; TrN: Tamura-Nei [82]; TVM: Transversion Model; + Γ: variation in rates among sites modeled using a gamma distribution [83]; +I; a proportion of sites modeled as invariant [79]. N taxa = number of available taxa on public databases. N sites = Number of aligned nucleotides.