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Table 2 Annotation of NR2E orthologs by clade

From: Analysis of C. elegans NR2E nuclear receptors defines three conserved clades and ligand-independent functions

Human

C. elegans

Drosophila

Other species

Tlx

nhr-67

tailless

Nematostella NvR5 (2)

[NM 003269]

[NM 069693]

[NM 079857]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

   

Apis AmTll (3)

   

Bombyx Tll (4)

   

Tribolium Tll (5)

   

Brugia BmNHR-15 (6)

   

Schmidtea Tlx (7)

   

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

   

Strongylocentrotus Tll (8)

   

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

   

Saccoglossus NP 001158362;Tll (9)

PNR

fax-1

unfulfilled/

Nematostella NvR6-NvR9 (2)

[NM 016346]

[NM 076146]

Hr51

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

  

[NM 137188]

Apis AmHr51 (3)

   

Bombyx BmHr51 (4)

   

Tribolium Hr51 (5)

   

Brugia BmNHR-16 (6)

   

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

   

Strongylocentrotus Pnr (8)

   

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

   

Saccoglossus NP 001158447; PNR (9)

No ortholog

nhr-239

Hr83 (1)

Nematostella NvR6-NvR9 (2)

 

[NM 065178]

[NM 141390]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

   

Apis AmHr83 (3)

   

Bombyx ortholog not identified (4)

   

Tribolium Hr83 (5)

   

Brugia BmNHR-C* (6)

   

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

   

Strongylocentrotus “Fax1” (8)

   

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

   

Saccoglossus XM 002740611; “NR6A1-like” (9)

  1. (1) Annotated as Drosophila “Fax-1” in [32].
  2. (2) Nematostella vectensis, four NR2E orthologs not clearly resolved, [38], this work.
  3. (3) Apis mellifera[39].
  4. (4) Bombyx mori[40].
  5. (5) Tribolium castaneum[18, 41].
  6. (6) Brugia malayi[15].
  7. (7) Schmidtea mediterranea[42].
  8. (8) Strongylocentrotus purpuratus[43].
  9. (9) Saccoglossus kowalevskii[44, 45], this work.
  10. * Incomplete gene assembly, tentative gene designation. The “Other species” column is organized by taxonomic groups: cnidarian, ecdysozoa, echinoderm, and hemichordate.
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BMC Ecology and Evolution

ISSN: 2730-7182

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