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Table 5 Phylogenetic information of the nuclear regions used in this study for the individual and combined datasets

From: Phylogeography and virulence structure of the powdery mildew population on its 'new' host triticale

 

DNA sequence region

 

ITS

chs1

tub2

EF1α c

Combinedd

isolatesa

73

73

73

69

69

haplotypes

2

2

8

17

29

sites

483

473

1425

1183

2608

constant characters

472

420

1329

980

2309

variable characters (uninformative)

11

53

92

166

258

parsimony informative characters

0

0

4

37

41

% informative characters

0

0

0.28

3.13

1.57

Model AICb

K80

GTR

GTR

GTR + G

GTR + G

  1. aIsolates were collected from triticale (35), wheat (35) and rye (2). We also included an isolate from barley (B.g. f.sp. hordei) in our analysis for comparison. These sequences were retrieved from GenBank with accession numbers AJ313137, AB273568, AJ313149 and HM538424.1, respectively for each locus.
  2. bModel of nucleotide substitution [49, 50].
  3. cWe were unable to obtain EF1α sequences for the isolates BgTR_A29, Bgta_B5, BgTR_B9 and Bgtd_D4.
  4. dOnly the loci tub2 and EF1α were included in the combined dataset.