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Table 3 Percentage of branch length for five classes of ω ratio for the different genes

From: Evolutionary mechanisms driving the evolution of a large polydnavirus gene family coding for protein tyrosine phosphatases

PTP genes

% of clade branch length with :

ω<0.2

0.2<ω<0.5

0.5<ω<1

1<ω<2

ω>2

Ι

6.6%

34.4%

50.7%

3.3%

5.1%

Ζ

17.5%

1.7%

45.6%

10.3%

24.9%

Cα

3.0%

26.3%

42.5%

21.5%

6.8%

RΔ

70.3%

16%

9.7%

0%

4.0%

ε

0%

0.4%

0.2%

0.3%

10,10%

MD

34.2%

16.2%

45.1%

4.5%

0%

H

56.7%

31.1%

8.1%

3.8%

0.3%

S

24.6%

21.1%

15.6%

19.1%

19.7%

EX

1.2%

30.6%

20.8%

28.0%

19.4%

P

3.6%

51.9%

30%

12,50%

2%

Q

7.1%

75.6%

14.2%

0%

3,10%

KL

0.8%

48.2%

39.1%

11.9%

0%

Y

25.2%

35.9%

27.1%

8.2%

3.6%

  1. The ω ratio for each branch was estimated using branch specific codon substitution models in PAML.