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Table 1 π, θ-w, # haplotypes, haplotype diversity

From: The fester locus in Botryllus schlosseri experiences selection

Fester A-type alleles

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

East Coast

0.020

0.020

0.010

0.030

17

0.96

West Coast

0.010

0.010

0.010

0.010

13

0.90

Fester B1-type alleles

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

East Coast

0.010

0.030

0.010

0.010

8

0.95

Fester C-type alleles

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

East Coast

0.010

0.030

0.010

0.020

13

0.93

40S_3A

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.001

0.014

0.000

0.002

6

0.533

Quissett, MA

0.001

0.004

0.000

0.001

3

0.600

Sandwich, MA

0.002

0.011

0.000

0.002

3

0.833

Monterey, CA

NA

NA

NA

NA

1

0.000

Santa Barbara, CA

0.006

0.025

0.000

0.006

2

0.500

Seattle, WA

0.009

0.040

0.000

0.007

3

0.800

All populations

0.003

0.014

0.000

0.005

9

0.658

60S_L6

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.002

0.006

0.001

0.003

5

0.455

Quissett, MA

0.001

0.003

0.000

0.002

5

0.433

Sandwich, MA

0.002

0.005

0.000

0.002

5

0.547

Monterey, CA

0.008

0.015

0.006

0.008

3

0.511

Santa Barbara, CA

0.002

0.004

0.002

0.004

8

0.699

Seattle, WA

0.002

0.007

0.001

0.003

8

0.678

All populations

0.003

0.008

0.002

0.007

18

0.711

60S_L8

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.001

0.003

0.001

0.002

5

0.524

Quissett, MA

0.002

0.004

0.001

0.002

5

0.599

Sandwich, MA

0.002

0.003

0.001

0.002

3

0.833

Monterey, CA

0.001

0.003

0.000

0.001

2

0.500

Santa Barbara, CA

NA

NA

NA

NA

NA

NA

Seattle, WA

0.001

0.002

0.001

0.001

3

0.506

All populations

0.002

0.003

0.001

0.001

5

0.593

60S_L10

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.005

0.020

0.000

0.007

7

0.393

Quissett, MA

0.007

0.032

0.000

0.007

6

0.693

Sandwich, MA

0.003

0.014

0.000

0.004

2

0.333

Monterey, CA

0.009

0.039

0.000

0.009

6

0.929

Santa Barbara, CA

0.010

0.041

0.000

0.009

7

0.911

Seattle, WA

0.008

0.035

0.000

0.005

10

0.776

All populations

0.008

0.036

0.000

0.007

18

0.672

60S_L13

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.007

0.018

0.004

0.005

13

0.833

Quissett, MA

0.008

0.019

0.004

0.006

7

0.655

Sandwich, MA

0.006

0.016

0.004

0.007

2

0.500

Monterey, CA

0.003

0.009

0.001

0.002

3

0.644

Santa Barbara, CA

0.007

0.021

0.003

0.005

4

0.714

Seattle, WA

0.008

0.026

0.003

0.006

16

0.903

All populations

0.010

0.028

0.004

0.006

19

0.833

71kda

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.004

0.014

0.000

0.005

10

0.804

Quissett, MA

0.004

0.014

0.001

0.005

9

0.735

Sandwich, MA

0.006

0.023

0.001

0.006

13

0.896

Monterey, CA

0.009

0.037

0.000

0.007

5

0.867

Santa Barbara, CA

0.008

0.032

0.000

0.006

19

0.943

Seattle, WA

0.004

0.014

0.001

0.004

7

0.909

All populations

0.008

0.029

0.001

0.007

47

0.906

actin

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.004

0.017

0.000

0.005

12

0.879

Quissett, MA

0.006

0.025

0.000

0.005

14

0.931

Sandwich, MA

0.005

0.021

0.000

0.006

12

0.918

Monterey, CA

0.004

0.015

0.000

0.004

4

0.652

Santa Barbara, CA

0.005

0.022

0.000

0.005

18

0.954

Seattle, WA

0.005

0.020

0.000

0.004

6

0.818

All populations

0.005

0.022

0.000

0.007

44

0.924

ADP/ATP translocase

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.008

0.029

0.001

0.007

13

0.863

Quissett, MA

0.014

0.052

0.002

0.014

3

0.833

Sandwich, MA

0.005

0.020

0.000

0.005

3

0.833

Monterey, CA

0.020

0.082

0.000

0.020

2

1.000

Santa Barbara, CA

NA

NA

NA

NA

NA

NA

Seattle, WA

0.012

0.046

0.001

0.012

4

1.000

All populations

0.009

0.034

0.001

0.007

18

0.915

Hsp90

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.015

0.065

0.001

0.020

13

0.788

Quissett, MA

0.010

0.044

0.001

0.016

13

0.812

Sandwich, MA

0.018

0.079

0.001

0.012

7

0.911

Monterey, CA

0.002

0.008

0.000

0.002

8

0.909

Santa Barbara, CA

0.002

0.008

0.000

0.002

9

0.815

Seattle, WA

0.014

0.063

0.001

0.013

3

0.464

All populations

0.010

0.045

0.001

0.014

23

0.685

ma2_actin

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.003

0.013

0.000

0.004

9

0.831

Quissett, MA

0.004

0.016

0.000

0.004

8

0.857

Sandwich, MA

0.003

0.011

0.000

0.004

7

0.768

Monterey, CA

0.004

0.017

0.000

0.006

3

0.385

Santa Barbara, CA

0.004

0.016

0.000

0.004

4

0.458

Seattle, WA

0.003

0.016

0.000

0.003

4

0.542

All populations

0.005

0.019

0.000

0.006

13

0.777

mtCOI

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.009

0.031

0.002

0.016

4

0.491

Quissett, MA

0.007

0.035

0.002

0.010

5

0.405

Sandwich, MA

0.026

0.094

0.004

0.158

3

0.833

Monterey, CA

0.002

0.007

0.000

0.003

2

0.400

Santa Barbara, CA

0.004

0.015

0.002

0.010

6

0.468

Seattle, WA

0.025

0.105

0.002

0.018

4

0.711

All populations

0.021

0.093

0.002

0.013

11

0.725

vasa

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.004

0.011

0.001

0.004

6

0.733

Quissett, MA

0.020

0.080

0.002

0.020

7

0.800

Sandwich, MA

0.023

0.095

0.000

0.020

10

0.970

Monterey, CA

0.012

0.047

0.001

0.010

5

0.857

Santa Barbara, CA

0.025

0.097

0.003

0.020

8

0.859

Seattle, WA

0.013

0.055

0.000

0.011

5

0.861

All populations

0.022

0.088

0.002

0.026

23

0.750

Vigilin

Population

Ï€ (All Sites)

Ï€ (Synonymous)

Ï€ (Nonsynonymous)

Θ-w (per site)

# Haplotypes

Haplotype diversity

Falmouth, MA

0.011

0.037

0.004

0.017

9

0.934

Quissett, MA

0.023

0.080

0.007

0.017

15

0.980

Sandwich, MA

0.019

0.065

0.007

0.016

11

0.958

Monterey, CA

0.018

0.069

0.004

0.018

5

0.893

Santa Barbara, CA

0.018

0.070

0.004

0.016

23

0.938

Seattle, WA

0.018

0.064

0.004

0.017

5

0.822

All populations

0.024

0.088

0.006

0.016

55

0.971