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Table 1 Symbiodinium community characterizations for each coral sample, including estimated proportion of clade D at three different loci, the average and standard deviation across the three proportions and the total number of sequence reads used in these estimations

From: Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodiniumclade D

Colony Treatment Proportion Clade D Standard deviation Total # reads
   ITS1 ITS2 cp 23S Average   
1* control 1.000 1.000 1.000 1.000 0.000 226
1* heated 0.994 1.000 1.000 0.998 0.004 268
2* control 0.973 1.000 1.000 0.991 0.015 206
2* heated 1.000 1.000 1.000 1.000 0.000 169
3* control 0.990 1.000 0.984 0.991 0.008 389
6* control 0.974 1.000 0.938 0.971 0.031 236
6* heated 1.000 0.984 0.879 0.954 0.065 123
9* control 0.974 1.000 1.000 0.991 0.015 126
9* heated 0.990 1.000 0.981 0.990 0.009 348
31^ control 0.013 0.000 0.006 0.006 0.006 645
31^ heated 0.006 0.000 0.009 0.005 0.005 519
40^ control 0.000 0.000 0.000 0.000 0.000 219
40^ heated 0.011 0.024 0.000 0.012 0.012 202
44* control 0.993 0.977 0.986 0.986 0.008 507
44^ heated 0.005 0.000 0.005 0.003 0.003 632
45 control 0.091 0.274 0.336 0.234 0.128 168
45^ heated 0.037 0.074 0.000 0.037 0.037 69
55^ control 0.039 0.013 0.064 0.038 0.026 704
55^ heated 0.031 0.000 0.036 0.022 0.020 636
61 control 0.439 0.387 0.587 0.471 0.104 521
61 heated 0.785 0.782 0.789 0.785 0.004 621
65^ control 0.000 0.012 0.038 0.017 0.020 240
65^ heated 0.000 0.000 0.000 0.000 0.000 583
68 control 0.361 0.108 0.099 0.189 0.149 77
68^ heated 0.000 0.000 0.000 0.000 0.000 290
70^ control 0.011 0.022 0.057 0.030 0.024 391
70^ heated 0.005 0.039 0.035 0.026 0.018 380
71* control 0.983 1.000 0.952 0.978 0.024 563
71* heated 0.980 0.992 0.943 0.971 0.025 599
75 control 1.000 1.000 0.829 0.943 0.098 101
75 heated 1.000 1.000 1.000 1.000 0.000 20
  1. For read count breakdowns for each individual locus see Additional file 3: Table S3. The symbols next to colony numbers indicate samples that were used in the de novo transcriptome assemblies: ^ for clade C Symbiodinium, * for clade D. ITS1 & ITS2=internal transcribed spacer regions 1 and 2, cp 23S=chloroplast 23S rRNA.