The salmonid myostatin gene family: a novel model for investigating mechanisms that influence duplicate gene fate

Lawson, Casey B; Niino, Takumu; Hermansen, Russell A; Brok-Volchanskaya, Vera; Jackson, Melissa F; Garikipati, Dilip K; Liberles, David A; Rodgers, Buel D

doi:10.1186/1471-2148-12-202

BMC Ecology and Evolution

Table 3 Likelihood ratio test analysis and dN/dS ratios for MSTN-2a and MSTN-2b

From: The salmonid myostatin gene family: a novel model for investigating mechanisms that influence duplicate gene fate

Foreground branch	P-value	Likehood ratio test	p₀	p₁	W₀	W₁
1	0.992953366	7.80E-05	0.85159	0.14839	0.11865	1
2	0.9953476	3.40E-05	0.85149	0.14837	0.11865	1
3	0.9953476	3.40E-05	0.85148	0.14837	0.11865	1
4	1	0	0.60715	0.10719	0.10494	1
5	1	0	0.70568	0.12296	0.11865	1.04992
6	0.998871621	2.00E-06	0.7009	0.12213	0.11865	1.04909
7	3.42E-11	43.922434	0.8387	0.12582	0.11621	518.94859
8	1	0	0.85161	0.14839	0.11865	1
9	1	0	0.85161	0.14839	0.11865	1
10	0.993717516	6.20E-05	0.8516	0.14839	0.11865	1
11	1	0	0.85161	0.14839	0.11865	1
12	1	0	0.69073	0.12412	0.11458	1
13	1	0	0.6942	0.12096	0.11862	1.20916
14	1	0	0.70098	0.1214	0.11862	1.05347
15	1	0	0.85161	0.14839	0.11865	1
16	0.625942013	0.237604	0.70371	0.12262	0.11865	1.12316
17	1	0	0.30086	0.05619	0.10976	1
18	*1.70E-12*	*49.80162*	*0.83059*	*0.09738*	*0.11719*	*146.51077*
19	*0.010178788*	*6.603336*	*0.83919*	*0.14111*	*0.11848*	*999*
20	1	0	0.85161	0.14839	0.11865	1
21	1	0	0.53537	0.09578	0.11454	1
22	1	0	0.85161	0.14839	0.11865	1
23	0.6663122	0.185568	0.77072	0.13927	0.11378	5.51208
24	1	0	0.727	0.12965	0.11646	1
25	1	0	0.85161	0.14839	0.11865	1
26	1	0	0.85161	0.14839	0.11865	1
27	1	0	0.85161	0.14839	0.11865	1
28	*4.37E-05*	*16.704412*	*0.83602*	*0.15333*	*0.1199*	*999*
29	1	0	0.85161	0.14839	0.11865	1
30	1	0	0.85161	0.14839	0.11865	1
31	1	0	0.85161	0.14839	0.11865	1
32	1	0	0.70563	0.12296	0.11865	1.08115
33	0.460406603	0.544906	0	0	0.11556	140.21885
34	0.994358151	5.00E-05	0.70444	0.12275	0.11865	1.06825
35	1	0	0.85161	0.14839	0.11865	1
36	1	0	0.70412	0.12269	0.11865	1.05
37	1	0	0.70542	0.12292	0.11865	1.05032
38	1	0	0.85161	0.14839	0.11865	1
39	1	0	0.69477	0.12223	0.11202	1
40	1	0	0	0	0.10345	1
41	1	0	0.74051	0.12707	0.11695	1
42	1	0	0.73126	0.12428	0.11865	1

Summary statistics generated for each foreground branch using a Branch-site test. Branches in bold and italics are statistically significant with a dN/dS ratio greater than 1. Compare foreground branches with Figures 8, 9.

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