Skip to main content

Table 3 RNA-seq quantification of gene expression in heat shock proteins

From: Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus californicus

Contig Idenitification

Fold change

% Divergence

dN/dSRatio

SD Accession

SC Accession

SD

SC

hsf

0.7

2.4

1.2

0.104

JW505571

JW525030

hspbeta-1 #1

1.0

0.74

2.8

0.163

JW504867

JW522977

hspbeta-1 #2

22.9*

4.5*

3.1

0.062

JW506232

JW525782

hspbeta-1 #3

24.6*

4.2*

2.8

0.262

JW506234

JW525781

hspbeta-1 #4

105.2*

4.7*

5.6

0.3

JW506233

JW525780

hspbeta-1 #5

4.9*

2.1

2.3

0.085

JW519143

JW525778

hsp10

0.97

0.44*

3.2

0.035

JW501904

JW520834

hsp16

9.8*

1.3

4

0.349

JW506236

JW525786

hsp20 #1

38.2*

3.0*

3.3

0.023

JW519178

JW525783

hsp20 #2

n/o

4.8*

-

-

n/o

N/A

hsp40 #1

1.9*

1.4

1.7

0

JW506223

JW525767

hsp40 #2

3.2*

1.8

3

0.032

JW506406

JW526009

hsp60

1.1

0.74

2.5

0

JW519415

JW521007

hsp67b2 #1

1.2

0.59*

8.7

0.029

JW506224

JW525770

hsp67b2 #2

0.88

0.46*

2

0.222

JW519141

JW525771

hsc70

1.9*

1.6

1.2

0

JW506426

JW525790

hsp70 #1

2.5*

1.3*

2.9

0.014

JW519142

JW525772

hsp70 #2

224.3*

7.9*

3.9

0.035

JW519350

JW526654

hsp70 #3

0.74

1.8

1.6

0

JW506218

JW525763

hsp70 #4

0.92

1.3

1.9

0

JW506217

JW525759

hsp70 #5

13.0*

3.8*

2.6

0.015

JW506905

JW526653

hsp70 #6

218.9*

n/o

-

-

JW506227

n/o

hsp70 #7

28.2*

n/o

-

-

JW506228

n/o

hsp70 #8

524.4*

n/o

-

-

JW506906

n/o

hsp70 #9

460.3*

7.3*

3.7

0

N/A

N/A

hsp70 #10

n/o

8.5*

-

-

n/o

N/A

hsp70 #11

n/o

7.3*

-

-

n/o

N/A

hsp70 #12

n/o

5.1*

-

-

n/o

JW525760

hsp70 #13

n/o

9.6*

-

-

n/o

JW525773

hsp70 #14

n/o

8.9*

-

-

n/o

JW525774

hsp70 #15

6.1*

2.6

0

0.021

JW502097

JW521081

hsp70 #16

2.7

1.3

3

0.043

JW506226

JW526652

hsp70 #17

0.99

1.8

4.2

0.061

JW506216

JW525758

hsp70 #18

0.92

1.3

1.8

0

JW506217

JW525759

hsp70 interacting protein

41.6*

n/o

-

-

N/A

n/o

hsp70/90 organizing protein

3.3*

0.83

2

0.023

JW506431

JW528118

hsp71 #1

88.7*

3.6

4.4

0

JW506229

JW533019

hsp71 #2

n/o

7.1*

-

-

n/o

JW525776

hsp90 #1

5.8*

3.3*

3.3

0.015

JW506231

JW525777

hsp90 #2

n/o

7.1*

-

-

n/o

N/A

hsp105

1.9

1.6

1.1

0

JW506426

JW525790

mtDNA hsp

37.0*

n/o

-

-

JW502693

n/o

  1. Statistically significant changes indicated by an asterisk. Uncorrected percent sequence divergence and the non-synonymous (dN) to synonymous (dS) substitution ratio are shown for trimmed alignments. Gaps in the data due to missing orthologs are indicated as “n/o”.
  2. N/A = contigs for which a NCBI accession was not created because their sequences were shorter than the minimum length allowed in a Trascriptome Shotgun Assembly (TSA) submission.