Accurate discrimination of bHLH domains in plants, animals, and fungi using biologically meaningful sites

Table 2 Validation of bHLH classified methods

Kingdom	BestHit	Decision			SWDA						CVA
Kingdom	BLAST	Tree	pah	pss	ms	cc	ec	all	pah	pss	ms	cc	ec	all
1302
Plant	95.5	95.6	96.5	90.7	96.5	92.7	96.8	97.3	97.9	91.5	97.0	92.1	97.7	100
Animal	98.6	95.8	94.2	94.0	91.1	93.4	94.8	97.2	95.7	94.3	92.0	94.3	96.0	99.7
Fungal	98.0	94.3	92.9	91.6	90.4	90.6	94.6	95.8	94.0	90.7	90.8	90.7	95.0	99.6
Total	97.2	92.8	91.8	88.1	89.0	88.4	93.1	95.2	93.8	88.2	89.9	88.5	94.4	99.6
Unclassified	37	5	62	60	65	74	65	61	80	80	80	80	80	80
6987
Plant	98.5	94.9	96.6	86.6	95.0	93.4	96.0	97.9	97.5	89.1	96.3	92.8	98.6	99.3
Animal	97.6	81.7	81.4	79.5	79.1	81.9	81.2	89.3	84.0	81.1	81.0	82.7	82.4	95.8
Fungal	97.3	82.7	82.0	84.8	81.6	84.1	82.4	89.2	84.6	85.4	82.3	85.3	82.6	96.1
Total	97.8	76.6	80.0	75.4	77.9	76.7	79.8	88.2	83.1	77.8	79.8	80.4	81.7	95.6
Unclassified	152	37	404	424	447	461	422	395	481	481	481	481	481	481

Note.-The accuracies are reported for several classification models; including, best hit BLAST, the decision tree analysis, SWDAS, and CVAS. The first measurements are based on the 1302 plant, animal, and fungal sequences used in building the models. The second set assesses the models with the 6987 sequence set which were not used in building the models. The number of sequences that were unable to be classified (Unclassified) for each model are also provided.

ISSN: 2730-7182