TY - BOOK AU - Carrol, R. PY - 1988 DA - 1988// TI - Vertebrate Paleontology and Evolution PB - W.H. Freeman and Company CY - New York ID - Carrol1988 ER - TY - JOUR AU - Bell, M. A. PY - 2001 DA - 2001// TI - Lateral plate evolution in the threespine stickleback: getting nowhere fast JO - Genetica VL - 112–113 ID - Bell2001 ER - TY - JOUR AU - Bell, M. A. AU - Orti, G. AU - Walker, J. A. AU - Koenings, J. P. PY - 1993 DA - 1993// TI - Evolution of Pelvic Reduction in Threespine Stickleback Fish: A Test of Competing Hypotheses JO - Evolution VL - 47 ID - Bell1993 ER - TY - JOUR AU - Shapiro, M. D. AU - Summers, B. R. AU - Balabhadra, S. AU - Aldenhoven, J. T. AU - Miller, A. L. AU - Cunningham, C. B. AU - Bell, M. A. AU - Kingsley, D. M. PY - 2009 DA - 2009// TI - The Genetic Architecture of Skeletal Convergence and Sex Determination in Ninespine Sticklebacks JO - Curr Biol VL - 19 ID - Shapiro2009 ER - TY - JOUR AU - Mobley, K. B. AU - Lussetti, D. AU - Johansson, F. AU - Englund, G. AU - Bokma, F. PY - 2011 DA - 2011// TI - Morphological and genetic divergence in Swedish postglacial stickleback (Pungitius pungitius) populations JO - BMC Evol Biol VL - 11 ID - Mobley2011 ER - TY - JOUR AU - Jones, F. C. AU - Grabherr, M. G. AU - Chan, Y. F. AU - Russell, P. AU - Mauceli, E. AU - Johnson, J. AU - Swofford, R. AU - Pirun, M. AU - Zody, M. C. AU - White, S. AU - Birney, E. AU - Searle, S. AU - Schmutz, J. AU - Grimwood, J. AU - Dickson, M. C. AU - Myers, R. M. AU - Miller, C. T. AU - Summers, B. R. AU - Knecht, A. K. AU - Brady, S. D. AU - Zhang, H. AU - Pollen, A. A. AU - Howes, T. AU - Amemiya, C. AU - Lander, E. S. AU - Palma, F. D. AU - Lindblad-Toh, K. AU - Kingsley, D. M. PY - 2012 DA - 2012// TI - The genomic basis of adaptive evolution in threespine sticklebacks JO - Nature VL - 484 ID - Jones2012 ER - TY - JOUR AU - Chen, L. AU - DeVries, A. L. AU - Cheng, C. C. PY - 1997 DA - 1997// TI - Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish JO - PNAS VL - 94 ID - Chen1997 ER - TY - JOUR AU - Herring, P. J. PY - 2000 DA - 2000// TI - Bioluminescent signals and the role of reflectors JO - J. Optics A-Pure and App. Optics VL - 2 ID - Herring2000 ER - TY - BOOK AU - Widder, E. A. PY - 1999 DA - 1999// TI - Bioluminesence. In Adaptive Mechanisms in the Ecology of Vision PB - Kluwer Academic Publishers CY - Dordrecht, the Netherlands ID - Widder1999 ER - TY - JOUR AU - Haddock, S. H. D. AU - Moline, M. A. AU - Case, J. F. PY - 2010 DA - 2010// TI - Bioluminescence in the Sea JO - Ann. Rev. Mar. Sci VL - 2 ID - Haddock2010 ER - TY - JOUR AU - Donley, J. M. AU - Sepulveda, C. A. AU - Konstantinidis, P. AU - Gemballa, S. AU - Shadwick, R. E. PY - 2004 DA - 2004// TI - Convergent evolution in mechanical design of lamnid sharks and tunas JO - Nature VL - 429 ID - Donley2004 ER - TY - JOUR AU - Childress, J. J. PY - 1995 DA - 1995// TI - Are there physiological and biochemical adaptations of metabolism in deep-sea animals? Trends Ecol JO - Evol VL - 10 ID - Childress1995 ER - TY - JOUR AU - Seibel, B. A. AU - Carlini, D. B. PY - 2001 DA - 2001// TI - Metabolism of pelagic cephalopods as a function of habitat depth: a reanalysis using phylogenetically independent contrasts JO - Biol Bull VL - 201 ID - Seibel2001 ER - TY - JOUR AU - McFall-Ngai, M. J. PY - 1990 DA - 1990// TI - Crypsis in the pelagic environment JO - Am. Zool VL - 30 ID - McFall-Ngai1990 ER - TY - BOOK AU - Hanlon, R. T. AU - Messenger, J. B. PY - 1996 DA - 1996// TI - Cephalopod Behavior PB - Cambridge University Press CY - Cambridge ID - Hanlon1996 ER - TY - JOUR AU - Packard, A. PY - 1972 DA - 1972// TI - Cephalopods and fish: The limits of convergence JO - Biol Rev VL - 47 ID - Packard1972 ER - TY - JOUR AU - Finn, J. K. AU - Tregenza, T. AU - Norman, M. K. PY - 2009 DA - 2009// TI - Defensive tool use in a coconut-carrying octopus JO - Current Biol VL - 19 ID - Finn2009 ER - TY - JOUR AU - Hanlon, R. T. AU - Chiao, C. C. AU - Mäthger, L. M. AU - Barbosa, A. AU - Buresch, K. C. AU - Chubb, C. PY - 2009 DA - 2009// TI - Cephalopod dynamic camouflage: bridging the continuum between background matching and disruptive coloration JO - Philos. Trans. R. Soc. London B VL - 364 ID - Hanlon2009 ER - TY - JOUR AU - Norman, M. AU - Finn, J. K. AU - Tregenza, T. PY - 2001 DA - 2001// TI - Dynamic mimicry in an Indo-Malayan octopus JO - Proc. R. Soc. London B VL - 268 ID - Norman2001 ER - TY - BOOK AU - Nesis, A. PY - 1982 DA - 1982// TI - Cephalopods of the World PB - T.F.H Publications CY - New Jersey ID - Nesis1982 ER - TY - JOUR AU - Strugnell, J. M. AU - Nishiguchi, M. K. PY - 2007 DA - 2007// TI - Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) inferred from three mitochondrial and six nuclear loci: a comparison of alignment, implied alignment and analysis methods JO - J. Moll. Stud VL - 73 ID - Strugnell2007 ER - TY - JOUR AU - Lindgren, A. R. AU - Giribet, G. AU - Nishiguchi, M. K. PY - 2004 DA - 2004// TI - A combined approach to the phylogeny of Cephalopoda (Mollusca) JO - Cladistics VL - 20 ID - Lindgren2004 ER - TY - JOUR AU - Strugnell, J. M. AU - Norman, M. AU - Jackson, J. AU - Drummond, A. J. AU - Cooper, A. PY - 2005 DA - 2005// TI - Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; the effect of data partitioning on resolving phylogenies in a Bayesian framework JO - Mol. Phylogenet. Evol VL - 37 ID - Strugnell2005 ER - TY - JOUR AU - Lindgren, A. R. PY - 2010 DA - 2010// TI - Molecular inference of phylogenetic relationships among Decapodiformes (Mollusca: Cephalopoda) with special focus on the squid order Oegopsida JO - Mol. Phylogenet. Evol VL - 56 ID - Lindgren2010 ER - TY - JOUR AU - Allcock, L. AU - Cooke, I. R. AU - Strugnell, J. M. PY - 2011 DA - 2011// TI - What can the mitochondrial genome reveal about higher-level phylogeny of the molluscan class Cephalopoda? JO - Zool. J. Linnean Soc VL - 161 ID - Allcock2011 ER - TY - BOOK AU - Naef, A. PY - 1923 DA - 1923// TI - Die Cephalopoden. Fauna e flora del Golfo di Napoli PB - Israel Programs for Scientific Translations CY - Jerusalem ID - Naef1923 ER - TY - JOUR AU - Young, R. E. AU - Vecchione, M. PY - 1996 DA - 1996// TI - Analysis of morphology to determine primary sister taxon relationships within coleoid cephalopods JO - Am. Malacological Bull VL - 12 ID - Young1996 ER - TY - JOUR AU - Norman, M. K. AU - Hochberg, F. G. PY - 2005 DA - 2005// TI - The current state of octopus taxonomy JO - Phuket Mar. Biol. Cent. Res. Bull VL - 66 ID - Norman2005 ER - TY - JOUR AU - Whitfield, J. B. AU - Lockhart, P. J. PY - 2007 DA - 2007// TI - Deciphering ancient rapid radiations JO - Trends Ecol. Evol VL - 22 ID - Whitfield2007 ER - TY - JOUR AU - Young, R. E. AU - Vecchione, M. AU - Donovan, D. PY - 1998 DA - 1998// TI - The evolution of coleoid cephalopods and their present biodiversity and ecology JO - South African Journal of Marine Science VL - 20 ID - Young1998 ER - TY - JOUR AU - Kröger, B. AU - Servais, T. AU - Zhang, Y. PY - 2009 DA - 2009// TI - The origin and initial rise of pelagic cephalopods in the Ordovician JO - PLoS One VL - 4 ID - Kröger2009 ER - TY - JOUR AU - Bloodgood, R. PY - 1977 DA - 1977// TI - Squid accessory nidamental gland – ultrastructure and association with bacteria JO - Tissue and Cell VL - 9 ID - Bloodgood1977 ER - TY - BOOK AU - Naef, A. PY - 1928 DA - 1928// TI - Die Cephalopoden. Embryologie PB - Amerind Publishing Company CY - New Dehli ID - Naef1928 ER - TY - JOUR AU - Fidiopiastis, P. AU - Boletzky, S. V. AU - Ruby, E. G. PY - 1998 DA - 1998// TI - A new niche for Vibrio logei, the predominant light organ symbiont of squids in the genus Sepiola JO - J Bacteriol VL - 180 ID - Fidiopiastis1998 ER - TY - JOUR AU - McFall-Ngai, M. J. AU - Montgomery, M. PY - 1990 DA - 1990// TI - The anatomy and morphology of the adult bacterial light organ of Euprymna scolopes Berry (Cephalopoda: Sepiolidae) JO - Biol Bull VL - 179 ID - McFall-Ngai1990 ER - TY - CHAP AU - Herring, P. J. ED - Wilbur, K. M. PY - 1988 DA - 1988// TI - Luminescent organs BT - The Mollusca PB - Academic CY - San Diego ID - Herring1988 ER - TY - JOUR AU - Coddington, J. A. PY - 1985 DA - 1985// TI - Review of: The Explanation of Organic Diversity: The Comparative Method and Adaptations for Mating JO - Cladistics VL - 1 ID - Coddington1985 ER - TY - BOOK AU - Harvey, P. H. AU - Pagel, M. D. PY - 1991 DA - 1991// TI - The Comparative Method in Evolutionary Biology PB - Oxford University Press CY - London ID - Harvey1991 ER - TY - JOUR AU - Martins, E. P. PY - 2000 DA - 2000// TI - Adaptation and the comparative method JO - Trends Ecol. Evol VL - 15 ID - Martins2000 ER - TY - JOUR AU - Westoby, M. AU - Leishman, M. R. AU - Lord, J. M. PY - 2007 DA - 2007// TI - On misinterpreting the phylogenetic correction JO - J Ecol VL - 83 ID - Westoby2007 ER - TY - JOUR AU - Price, T. PY - 1997 DA - 1997// TI - Correlated evolution and independent contrasts JO - Philos. Trans. R. Soc. London Ser. B VL - 352 ID - Price1997 ER - TY - JOUR AU - Baum, D. A. AU - Larson, A. PY - 1991 DA - 1991// TI - A phylogenetic methodology for studying character macroevolution JO - Syst. Zool VL - 40 ID - Baum1991 ER - TY - JOUR AU - Leroi, A. M. AU - Rose, M. R. AU - Lauder, G. V. PY - 1994 DA - 1994// TI - What does the comparative method reveal about adaptation? Am JO - Nat VL - 143 ID - Leroi1994 ER - TY - JOUR AU - Monnet, C. AU - Baets, K. AU - Klug, C. PY - 2011 DA - 2011// TI - Parallel evolution controlled by adaptation and covariation in ammonoid cephalopods JO - BMC Evol Biol VL - 11 ID - Monnet2011 ER - TY - BOOK AU - Voss, G. L. PY - 1988 DA - 1988// TI - Evolution and phylogenetic relationships of deep-sea octopods (Cirrata and Incirrata). In The Mollusca: Paleontology and neontology of cephalopods PB - Academ CY - London ID - Voss1988 ER - TY - JOUR AU - Voight, J. R. PY - 1997 DA - 1997// TI - Cladistic analysis of the octopods based on morphological characters JO - J. Moll. Stud VL - 63 ID - Voight1997 ER - TY - JOUR AU - Carlini, D. B. AU - Graves, J. E. PY - 1999 DA - 1999// TI - Phylogenetic analysis of cytochrome c oxidase subunit I sequences to determine higher-level relationships within the coleoid cephalopods JO - Bull Mar Sci VL - 64 ID - Carlini1999 ER - TY - JOUR AU - Carlini, D. B. AU - Young, R. E. AU - Vecchione, M. PY - 2001 DA - 2001// TI - A molecular phylogeny of Octopoda (Mollusca: Cephalopoda) evaluated in light of morphological evidence JO - Molec. Phylogenet. Evol VL - 21 ID - Carlini2001 ER - TY - JOUR AU - Bonnaud, L. AU - Boucher-Rodoni, R. AU - Monnerott, M. PY - 1996 DA - 1996// TI - Relationship of some coleoid cephalopods established by 3’ end of the 16 S rDNA and cytochrome oxidase III gene sequence comparison JO - Am. Malacological Bull VL - 12 ID - Bonnaud1996 ER - TY - JOUR AU - Bonnaud, L. AU - Boucher-Rodoni, R. AU - Monnerott, M. PY - 1997 DA - 1997// TI - Phylogeny of cephalopods inferred from mitochondrial DNA sequences JO - Mol. Phylogenet. Evol VL - 7 ID - Bonnaud1997 ER - TY - JOUR AU - Akasaki, T. AU - Nikaido, K. AU - Tsuchiya, K. AU - Segawa, S. AU - Hasegawa, M. AU - Okada, N. PY - 2006 DA - 2006// TI - Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications JO - Mol. Phylogenet. Evol VL - 38 ID - Akasaki2006 ER - TY - JOUR AU - Yokobori, S. AU - Fukuda, N. AU - Nakamura, M. AU - Aoyama, T. AU - Oshima, T. PY - 2004 DA - 2004// TI - Long-term conservation of six duplicated structural genes in cephalopod mitochondrial genomes JO - Mol Biol Evol VL - 21 ID - Yokobori2004 ER - TY - JOUR AU - Yokobori, S. AU - Lindsay, M. AU - Yoshida, M. AU - Tsuchiya, K. AU - Yamagashi, A. AU - Maruyama, T. AU - Oshima, T. PY - 2007 DA - 2007// TI - Mitochondrial genome structure and evolution in the living fossil vampire squid, Vampyroteuthis infernalis, and extant cephalopods JO - Mol. Phylogenet. Evol VL - 44 ID - Yokobori2007 ER - TY - JOUR AU - Strugnell, J. M. AU - Rogers, A. D. AU - Prodöhl, P. A. AU - Collins, M. A. AU - Allcock, A. L. PY - 2008 DA - 2008// TI - The thermohaline expressway: the Southern Ocean as a centre of origin for deep‒sea octopuses JO - Cladistics VL - 24 ID - Strugnell2008 ER - TY - JOUR AU - Berthold, T. AU - Engeser, T. PY - 1987 DA - 1987// TI - Phylogenetic analysis and systematization of the Cephalopoda (Mollusca) JO - Verh. Naturwiss. Ver. Hamburg VL - 29 ID - Berthold1987 ER - TY - JOUR AU - Vecchione, M. AU - Young, R. E. AU - Donovan, D. T. AU - Rodhouse, P. G. PY - 1999 DA - 1999// TI - Reevaluation of coleoid cephalopod relationships based on modified arms in the Jurassic coleoid Mastigophora JO - Lethaia VL - 32 ID - Vecchione1999 ER - TY - JOUR AU - Carlini, D. B. AU - Reece, K. B. AU - Graves, J. E. PY - 2000 DA - 2000// TI - Actin gene family evolution and the phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) JO - Mol Biol Evol VL - 17 ID - Carlini2000 ER - TY - JOUR AU - Bonnaud, L. AU - Saihi, A. AU - Boucher-Rodoni, R. PY - 2002 DA - 2002// TI - Are 28s rDNA and 18s rDNA informative for cephalopod phylogeny? JO - Bull Mar Sci VL - 71 ID - Bonnaud2002 ER - TY - JOUR AU - Lindgren, A. R. AU - Daly, M. PY - 2007 DA - 2007// TI - The impact of length-variable data and alignment criterion on the phylogeny of Decapodiformes (Mollusca: Cephalopoda) JO - Cladistics VL - 23 ID - Lindgren2007 ER - TY - BOOK AU - Jereb, P. AU - Roper, C. F. E. PY - 2005 DA - 2005// TI - Cephalopods of the World. An annotated and illustrated catalogue of cephalopod species known to date: Chambered nautiluses and sepioids. In FAO Species Catalogue for Fisheries Purposes PB - Food and Agriculture Organization of the United Nations CY - Rome ID - Jereb2005 ER - TY - JOUR AU - Seibel, B. A. AU - Hochberg, F. G. AU - Carlini, D. B. PY - 2000 DA - 2000// TI - Life history of Gonatus onyx (Cephalopoda: Teuthoidea): deep-sea spawning and post-spawning egg care JO - Mar Biol VL - 137 ID - Seibel2000 ER - TY - JOUR AU - Zylinski, S. AU - Johnsen, S. PY - 2011 DA - 2011// TI - Mesopelagic cephalopods switch between transparency and pigmentation to optimize camouflage in the deep JO - Current Biol VL - 21 ID - Zylinski2011 ER - TY - JOUR AU - Boletzky, S. PY - 1994 DA - 1994// TI - Embryonic development of cephalopods at low temperatures JO - Antarct Sci VL - 6 ID - Boletzky1994 ER - TY - JOUR AU - Voight, J. R. AU - Grehan, A. J. PY - 2000 DA - 2000// TI - Egg brooding by deep-sea octopuses in the North Pacific Ocean JO - Biol Bull VL - 198 ID - Voight2000 ER - TY - JOUR AU - Bekendorff, K. AU - Davis, A. R. AU - Brenner, J. B. PY - 2001 DA - 2001// TI - Chemical defense in the egg massess of benthic invertebrates: an assessment of antibacterial activity in 39 mollusks and 4 polychaetes JO - J Invertebr Pathol VL - 78 ID - Bekendorff2001 ER - TY - JOUR AU - Barbieri, E. AU - Barry, K. AU - Child, A. AU - Wainwright, N. PY - 1997 DA - 1997// TI - Antimicrobial activity in the microbial community of the accessory nidamental gland and egg cases of Loligo pealei (Cephalopoda: Loliginidae) JO - Biol Bull VL - 193 ID - Barbieri1997 ER - TY - JOUR AU - Barbieri, E. AU - Gulledge, J. AU - Moser, D. AU - Chieng, C. C. PY - 1996 DA - 1996// TI - New evidence for bacterial diversity in the accessory nidamental gland of the squid Loligo pealei JO - Biol Bull VL - 191 ID - Barbieri1996 ER - TY - JOUR AU - Kaufman, M. Y. AU - Ikeda, Y. AU - Patton, C. AU - Van Dykhuizen, G. AU - Epel, D. PY - 1998 DA - 1998// TI - Bacterial symbionts colonize the accessory nidamental gland of the squid Loligo opalescens via horizontal transmission JO - Biol Bull VL - 194 ID - Kaufman1998 ER - TY - JOUR AU - Pichon, D. AU - Gaia, V. AU - Norman, M. AU - Boucher, R. PY - 2005 DA - 2005// TI - Phylogenetic diversity of epibiotic bacteria in the accessory nidamental glands of squids (Cephalopoda: Loliginidae and Idiosepiidae) JO - Mar Biol VL - 147 ID - Pichon2005 ER - TY - JOUR AU - Nair, P. AU - Sherief, P. M. PY - 2010 DA - 2010// TI - Antibacterial activity in the accessory nidamental gland extracts of the Indian squid, Loligo duvauceli Orbigny JO - Indian J. Mar. Sci VL - 39 ID - Nair2010 ER - TY - JOUR AU - Piatigorsky, J. PY - 2001 DA - 2001// TI - Enigma of the abundant water-soluble cytoplasmic proteins of the cornea: the “refraction” hypothesis JO - Cornea VL - 20 ID - Piatigorsky2001 ER - TY - BOOK AU - Harvey, E. N. PY - 1952 DA - 1952// TI - Bioluminescence PB - Academic CY - New York ID - Harvey1952 ER - TY - JOUR AU - Kishitani, T. PY - 1928 DA - 1928// TI - Preliminary report on the luminous symbiosis in Sepiola birostrata Sasaki JO - Proc. Imp. Acad. Jpn VL - 4 ID - Kishitani1928 ER - TY - JOUR AU - Kishitani, T. PY - 1928 DA - 1928// TI - L’tétude de I’organe photognène du Loligo edulis Hoyle (Notes préliminaires) JO - Proc. Imp. Acad. Jpn VL - 4 ID - Kishitani1928 ER - TY - JOUR AU - Arnold, J. AU - Young, R. PY - 1974 DA - 1974// TI - Ultrastructure of a cephalopod photophore. I. Structure of the photogenic tissue JO - Biol Bull VL - 174 ID - Arnold1974 ER - TY - JOUR AU - Young, R. E. AU - Arnold, J. PY - 1982 DA - 1982// TI - The functional morphology of a ventral photophore from the mesopelagic squid Abralia trigonura JO - Malacologia VL - 23 ID - Young1982 ER - TY - JOUR AU - Young, R. AU - Roper, C. F. AU - Mangold, K. AU - Leisman, G. AU - Hochberg, F. G. PY - 1979 DA - 1979// TI - Luminescence from non-bioluminescent tissues in oceanic cephalopods JO - Mar Biol VL - 53 ID - Young1979 ER - TY - STD TI - Takahashi H, Isobe M: Photoprotein of luminous squid, Symplectoteuthis oualaniensis and reconstruction of the luminous system. Chem Lett. 1994,  : 843-846. ID - ref78 ER - TY - JOUR AU - Isobe, M. AU - Kuse, M. AU - Tanji, N. AU - Matsuda, T. PY - 2008 DA - 2008// TI - Cysteine-390 is the binding site of luminous substance with symplectin, a photoprotein from Okinawan squid, Symplectoteuthis oualaniensis JO - Proc. Jpn. Acad. Ser. B Phys. Biol. Sci VL - 84 ID - Isobe2008 ER - TY - JOUR AU - Tsujii, F. PY - 2002 DA - 2002// TI - Bioluminescence reaction catalyzed by membrane-bound luciferase in the “firefly squid” Watasenia scintillans JO - BBA Biomembranes VL - 1564 ID - Tsujii2002 ER - TY - BOOK AU - Herring, P. J. PY - 1977 DA - 1977// TI - Luminescence in cephalopods and fish. In Biology of Cephalopods. Symposia of the Zoological Society of London PB - Academic CY - London ID - Herring1977 ER - TY - JOUR AU - Herring, P. J. AU - Dilly, P. N. AU - Cope, C. PY - 1992 DA - 1992// TI - Different types of photophore in the oceanic squids Octopoteuthis and Taningia (Cephalopoda: Octopoteuthidae) JO - J. Zool VL - 227 ID - Herring1992 ER - TY - JOUR AU - Young, R. E. PY - 1983 DA - 1983// TI - Oceanic bioluminescence - an overview of general functions JO - Bull Mar Sci VL - 33 ID - Young1983 ER - TY - JOUR AU - Robison, B. H. AU - Young, R. E. PY - 1981 DA - 1981// TI - Bioluminescence in pelagic octopods JO - Pac Sci VL - 35 ID - Robison1981 ER - TY - JOUR AU - Young, R. E. AU - Seapy, R. AU - Mangold, K. M. AU - Hochberg, F. G. PY - 1982 DA - 1982// TI - Luminescent flashing in the midwater squids Pterygioteuthis microlampas and P. giardi JO - Mar Biol VL - 69 ID - Young1982 ER - TY - JOUR AU - Robison, B. H. AU - Reisenbichler, K. R. AU - Hunt, J. C. AU - Haddock, S. H. D. PY - 2003 DA - 2003// TI - Light production by the arm tips of the deep-sea cephalopod Vampyroteuthis infernalis JO - Biol Bull VL - 205 ID - Robison2003 ER - TY - JOUR AU - Bush, S. L. AU - Robison, B. H. AU - Caldwell, R. H. PY - 2009 DA - 2009// TI - Behaving in the dark: loctomotor, chromatic, postural, and bioluminescent behaviors of the deep-sea squid Octopoteuthis deletron Young 1972 JO - Biol Bull VL - 216 ID - Bush2009 ER - TY - STD TI - Young RE, Vecchione M, Sweeney MJ: Bathyteuthoidea:. The Tree of Life Web Project. -[tolweb.org/Bathyteuthoidea] ID - ref88 ER - TY - JOUR AU - Nishiguchi, M. K. AU - Lopez, J. AU - Boletzky, S. V. PY - 2004 DA - 2004// TI - Enlightenment of old ideas from new investigations: more questions regarding the evlution of bacteriogenic light organs in squids JO - Evol. Devel VL - 61 ID - Nishiguchi2004 ER - TY - JOUR AU - Guerrero-Ferreira, R. AU - Nishiguchi, M. K. PY - 2007 DA - 2007// TI - Biodiversity among luminescent symbionts from squid of the genera Uroteuthis, Loliolus and Euprymna (Mollusca: Cephalopoda) JO - Cladistics VL - 23 ID - Guerrero-Ferreira2007 ER - TY - JOUR AU - Jones, B. AU - Nishiguchi, M. K. PY - 2004 DA - 2004// TI - Counterillumination in the Hawaiian bobtail squid, Euprymna scolopes Berry (Mollusca: Cephalopoda) JO - Mar Biol VL - 144 ID - Jones2004 ER - TY - JOUR AU - Sweeney, M. J. AU - Roper, C. F. PY - 1998 DA - 1998// TI - Classification, type localities and type repositories of recent Cephalopoda JO - Smithsonian Cont. Zool VL - 586 ID - Sweeney1998 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nuc. Acids Res VL - 32 ID - Edgar2004 ER - TY - JOUR AU - Stamatakis, A. PY - 2006 DA - 2006// TI - RAxML-VI-HPC: Maximum Likelihood-based phylogenetic analyses with thousands of taxa and mixed models JO - Bioinformatics VL - 22 ID - Stamatakis2006 ER - TY - JOUR AU - Katoh, K. AU - Misawa, K. AU - Kuma, K. AU - Miyata, T. PY - 2002 DA - 2002// TI - MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform JO - Nuc. Acids Res VL - 30 ID - Katoh2002 ER - TY - JOUR AU - Wernersson, R. PY - 2006 DA - 2006// TI - Virtual Ribosome - a comprehensive translation tool wth support for sequence feature integration JO - Nuc. Acids Res VL - 34 ID - Wernersson2006 ER - TY - JOUR AU - Abscal, F. AU - Zardoya, R. AU - Telford, M. J. PY - 2010 DA - 2010// TI - TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations JO - Nuc. Acids Res VL - 38 ID - Abscal2010 ER - TY - JOUR AU - Sanderson, M. AU - Shaffer, H. B. PY - 2002 DA - 2002// TI - Troubleshooting molecular phylogenetic analyses JO - Ann. Rev. Ecol. Syst VL - 33 ID - Sanderson2002 ER - TY - JOUR AU - Thomson, R. C. AU - Shaffer, H. B. PY - 2010 DA - 2010// TI - Sparse supermatrices for phylogenetic inference: Taxonomy, alignment, rogue taxa, and the phylogeny of living turtles JO - Syst Biol VL - 59 ID - Thomson2010 ER - TY - JOUR AU - Posada, D. AU - Crandall, K. PY - 1998 DA - 1998// TI - Modeltest: testing the model of DNA substitution JO - Bioinformatics VL - 14 ID - Posada1998 ER - TY - JOUR AU - Nylander, J. A. AU - Ronquist, A. F. AU - Huelsenbeck, J. P. AU - Nieves Aldrey, J. L. PY - 2004 DA - 2004// TI - Bayesian phylogenetic analysis of combined data JO - Syst Biol VL - 53 ID - Nylander2004 ER - TY - JOUR AU - Brandley, M. C. AU - Schmitz, A. AU - Reeder, T. W. PY - 2005 DA - 2005// TI - Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scinid lizards JO - Syst Biol VL - 54 ID - Brandley2005 ER - TY - JOUR AU - Shwarz, G. PY - 1978 DA - 1978// TI - Estimating the dimensions of a model JO - Ann Stat VL - 6 ID - Shwarz1978 ER - TY - JOUR AU - McGuire, J. A. AU - Witt, C. C. AU - Altshuler, D. L. AU - Remsen, J. V. PY - 2007 DA - 2007// TI - Phylogenetic systematics and biogeography of hummingbirds: Bayesian and Maximum Likelihood analyses of partitioned data and selection of an appropriate partitioning strategy JO - Syst Biol VL - 56 ID - McGuire2007 ER - TY - JOUR AU - Lartillot, N. AU - Phillipe, H. PY - 2004 DA - 2004// TI - A Bayesian mixsture model for across-site heterogeneities in the amino-acid replacement process JO - Mol Biol Evol VL - 21 ID - Lartillot2004 ER - TY - JOUR AU - Lartillot, N. AU - Phillipe, H. PY - 2006 DA - 2006// TI - Computing Bayes factors using thermodynamic integration JO - Syst Biol VL - 55 ID - Lartillot2006 ER - TY - BOOK AU - Jereb, P. AU - Roper, C. F. E. PY - 2010 DA - 2010// TI - Cephalopods of the World. An annotated and illustrated catalogue of cephalopod species known to date: Myopsid and Oegopsid Squids PB - Food and Agriculture Organization of the United Nations CY - Rome ID - Jereb2010 ER - TY - JOUR AU - Pagel, M. AU - Meade, A. PY - 2006 DA - 2006// TI - Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo JO - Am Nat VL - 167 ID - Pagel2006 ER - TY - JOUR AU - Schluter, D. AU - Price, T. AU - Mooers, A. Ø. AU - Ludwig, D. PY - 1997 DA - 1997// TI - Likelihood of ancestor states in adaptive radiation JO - Evolution VL - 51 ID - Schluter1997 ER - TY - BOOK AU - Edwards, A. F. W. PY - 1972 DA - 1972// TI - Likelihood PB - Cambridge University Press CY - Cambridge ID - Edwards1972 ER - TY - JOUR AU - Pagel, M. PY - 1999 DA - 1999// TI - The maximum likelihood approach to reconstructing ancestral character states of disccrete characters on phylogenies JO - Syst Biol VL - 48 ID - Pagel1999 ER - TY - JOUR AU - Lindgren, A. R. PY - 2010 DA - 2010// TI - Molecular inference of phylogenetic relationships among Decapo diformes (Mollusca: Cephalopoda) with special focus on the squid Order Oegopsida JO - Mol. Phylogenet. Evol VL - 56 ID - Lindgren2010 ER - TY - JOUR AU - Mindell, D. P. AU - Honeycutt, R. L. PY - 1990 DA - 1990// TI - Ribosomal RNA in vertebrates: evolution and phylogenetic applications JO - Annu Rev Ecol Evol Syst VL - 21 ID - Mindell1990 ER - TY - JOUR AU - Phillips, M. J. AU - Delsuc, F. AU - Penny, D. PY - 2004 DA - 2004// TI - Genome-scale phylogeny and the detection of systematic biases JO - Mol. Biol. Evolution VL - 21 ID - Phillips2004 ER - TY - JOUR AU - Schmidt, H. A. AU - Strimmer, K. AU - Vingron, M. AU - von Haeseler, A. PY - 2002 DA - 2002// TI - TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing JO - Bioinformatics VL - 18 ID - Schmidt2002 ER - TY - BOOK AU - Swofford, D. L. PY - 2002 DA - 2002// TI - PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4 PB - Sinauer Associates CY - Sunderland, Massachusetts ID - Swofford2002 ER - TY - JOUR AU - Xia, X. AU - Xie, Z. PY - 2001 DA - 2001// TI - DAMBE: Data analysis in molecular biology and evolution JO - J Hered VL - 92 ID - Xia2001 ER -