From: Unraveling reticulate evolution in North American Dryopteris (Dryopteridaceae)
With outgroup | Just Dryopteris | Indels | |||||||
---|---|---|---|---|---|---|---|---|---|
Region | Primer source | Aligned bases | Optimal model of evolution | Variable bases | PIC* | Variable bases | PIC* | #, just in Dryopteris | PIC |
rbcL | Korall et al., 2006 [65] | 1365 | GTR+Γ | 179 (13%) | 116 (8%) | 163 (12%) | 93 (7%) | 34 | 16 (47%) |
rbcL-accD | Korall et al., 2007 [66] | 1650 | GTR+I+Γ | 261 (16%) | 161 (10%) | 226 (14%) | 123 (7%) | 37 | 7 (19%) |
trnG-trnR | Korall et al., 2007 [66] | 1057 | HKY+Γ | 277 (26%) | 204 (19%) | 229 (22%) | 165 (16%) | 34 | 14 (41%) |
psbA-trnH | Kress et al., 2005 [67] | 476 | HKY | 75 (16%) | 48 (10%) | 62 (13%) | 35 (7%) | 11 | 3 (27%) |
trnP-petG | Small et al., 2005 [68] | 551 | GTR+Γ | 195 (35%) | 142 (26%) | 166 (30%) | 115 (21%) | 30 | 18 (60%) |
rps4-trnS | Rouhan et al., 2004 [69] | 464 | HKY+Γ | 160 (34%) | 112 (24%) | 125 (27%) | 84 (18%) | 17 | 4 (24%) |
trnL-F | Taberlet et al., 1991 [70] | 352 | HKY+Γ | 92 (26%) | 59 (17%) | 70 (20%) | 41 (12%) | 12 | 5 (42%) |
matK | Duffy et al., 2009 [71] | 977 | HKY+Γ | 250 (26%) | 189 (19%) | 189 (19%) | 133 (14%) | 12 | 2 (17%) |
trnV-trnM | Small et al., 2005 [68] | 1021 | HKY+Γ | 336 (33%) | 211 (21%) | 271 (27%) | 154 (15%) | 67 | 35 (52%) |
Total plastid | --- | 7913 | --- | 1825 (23%) | 1242 (16%) | 1501 (19%) | 943 (12%) | 254 | 104 (41%) |
pgiC | Ishikawa et al., 2002 [72] | 744 | HKY+Γ | 163 (22%) | 97 (13%) | 137 (18%) | 96 (13%) | 35 | 20 (57%) |
gapCp | Schuettpelz et al., 2008 [73] | 729 | GTR+Γ | 229 (31%) | 144 (20%) | 197 (27%) | 141 (19%) | 62 | 34 (55%) |