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Table 3 Statistics for the plastid and nuclear genomic regions sequenced for this study

From: Unraveling reticulate evolution in North American Dryopteris (Dryopteridaceae)

    

With outgroup

 

Just Dryopteris

 

Indels

 

Region

Primer source

Aligned bases

Optimal model of evolution

Variable bases

PIC*

Variable bases

PIC*

#, just in Dryopteris

PIC

rbcL

Korall et al., 2006 [65]

1365

GTR+Γ

179 (13%)

116 (8%)

163 (12%)

93 (7%)

34

16 (47%)

rbcL-accD

Korall et al., 2007 [66]

1650

GTR+I+Γ

261 (16%)

161 (10%)

226 (14%)

123 (7%)

37

7 (19%)

trnG-trnR

Korall et al., 2007 [66]

1057

HKY+Γ

277 (26%)

204 (19%)

229 (22%)

165 (16%)

34

14 (41%)

psbA-trnH

Kress et al., 2005 [67]

476

HKY

75 (16%)

48 (10%)

62 (13%)

35 (7%)

11

3 (27%)

trnP-petG

Small et al., 2005 [68]

551

GTR+Γ

195 (35%)

142 (26%)

166 (30%)

115 (21%)

30

18 (60%)

rps4-trnS

Rouhan et al., 2004 [69]

464

HKY+Γ

160 (34%)

112 (24%)

125 (27%)

84 (18%)

17

4 (24%)

trnL-F

Taberlet et al., 1991 [70]

352

HKY+Γ

92 (26%)

59 (17%)

70 (20%)

41 (12%)

12

5 (42%)

matK

Duffy et al., 2009 [71]

977

HKY+Γ

250 (26%)

189 (19%)

189 (19%)

133 (14%)

12

2 (17%)

trnV-trnM

Small et al., 2005 [68]

1021

HKY+Γ

336 (33%)

211 (21%)

271 (27%)

154 (15%)

67

35 (52%)

Total plastid

---

7913

---

1825 (23%)

1242 (16%)

1501 (19%)

943 (12%)

254

104 (41%)

pgiC

Ishikawa et al., 2002 [72]

744

HKY+Γ

163 (22%)

97 (13%)

137 (18%)

96 (13%)

35

20 (57%)

gapCp

Schuettpelz et al., 2008 [73]

729

GTR+Γ

229 (31%)

144 (20%)

197 (27%)

141 (19%)

62

34 (55%)

  1. *Parsimony-informative characters.