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Table 5 Phylogenetic performance of nuclear and mt genes

From: On the phylogeny of Mustelidae subfamilies: analysis of seventeen nuclear non-coding loci and mitochondrial complete genomes

Genea

no. congruent branches (BP > 0.95)

no. congruent branches (BP < 0.95)

total no. congruent branches

Nodeb

     

1

2

3

4

5

6

7

8

9

Mt gene

nd5

8

1

9

*

*

*

#

*

*

*

*

*

 

cytb

8

1

9

*

*

*

*

#

*

*

*

*

 

16sRNA

8

0

8

*

*

 

*

*

*

*

*

*

 

nd2

6

1

7

*

 

#

*

 

*

*

*

*

 

cox2

6

0

6

*

 

*

*

 

*

*

*

 
 

nd4

6

0

6

*

   

*

*

*

*

*

 

nd6

5

1

6

*

*

   

*

*

*

#

 

12sRNA

5

1

6

*

#

   

*

*

*

*

 

nd3

4

2

6

*

#

   

*

#

*

*

 

cox1

5

0

5

*

    

*

*

*

*

 

cox3

5

0

5

*

*

 

#

 

*

*

*

 
 

tRNAs

4

1

5

*

#

    

*

*

*

 

nd1

4

1

5

*

    

#

*

*

*

 

atp8

3

1

4

*

#

   

*

 

*

 
 

atp6

4

0

4

*

    

*

 

*

*

 

nd4l

2

0

2

     

*

#

*

 

Nuclear gene

Plod2-13

6

2

8

*

*

#

#

*

*

*

*

 
 

Plod2-14

6

1

7

*

*

*

*

#

*

 

*

 
 

Coro1c-5

5

1

6

*

*

 

*

#

*

-

*

 
 

Tinagl1-3

5

1

6

*

*

#

*

-

*

 

*

 
 

Coro1c-4

6

0

6

*

 

*

 

*

*

*

*

 
 

Tinagl1-1

6

0

6

*

*

 

*

*

*

 

*

 
 

Cidea-1

6

0

6

*

*

*

*

-

*

 

*

 
 

Ociad1-4

4

2

6

*

#

*

*

#

  

*

 
 

Wasf1-3

5

1

6

*

*

 

*

#

*

 

*

 
 

Fgb-7

5

1

6

#

*

 

*

*

*

 

*

 
 

Ttr-1

6

0

6

*

*

 

*

*

*

-

*

 
 

Wasf1-6

5

0

5

*

*

 

*

*

  

*

 
 

Fgb-4

4

1

5

*

  

*

#

*

 

*

 
 

Wasf1-7

3

0

3

*

*

     

*

 
 

Guca1b-3

2

0

2

*

      

*

 
 

Ssr1-5

2

0

2

*

      

*

 
 

Tbc1d7-6

0

0

0

         
  1. Node numbers correspond to those indicated in Figure 2 and 3
  2. a genes are ranked by the total number of congruent branches in the combined topologies
  3. b there are 9 nodes in total indicated in the mt genome tree (Figure 3) and 8 nodes in the combined nuclear gene tree (Figure 2)
  4. * branches with PP > 0.95 congruent in the combined topology
  5. # branches with PP < 0.95 congruent in the combined topology
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BMC Ecology and Evolution

ISSN: 2730-7182

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