TY - JOUR AU - Navarathna, D. H. AU - Harris, S. D. AU - Roberts, D. D. AU - Nickerson, K. W. PY - 2010 DA - 2010// TI - Evolutionary aspects of urea utilization by fungi JO - FEMS Yeast Res VL - 10 UR - https://doi.org/10.1111/j.1567-1364.2009.00602.x DO - 10.1111/j.1567-1364.2009.00602.x ID - Navarathna2010 ER - TY - JOUR AU - Ghosh, S. AU - Navarathna, D. H. AU - Roberts, D. D. AU - Cooper, J. T. AU - Atkin, A. L. AU - Petro, T. M. AU - Nickerson, K. W. PY - 2009 DA - 2009// TI - Arginine-induced germ tube formation in Candida albicans is essential for escape from murine macrophage line RAW 264.7 JO - Infect Immun VL - 77 UR - https://doi.org/10.1128/IAI.01452-08 DO - 10.1128/IAI.01452-08 ID - Ghosh2009 ER - TY - JOUR AU - Roon, R. J. AU - Levenberg, B. PY - 1972 DA - 1972// TI - Urea amidolyase. I. Properties of the enzyme from Candida utilis JO - J Biol Chem VL - 247 ID - Roon1972 ER - TY - CHAP AU - Leftley, J. W. AU - Syrett, P. J. PY - 1973 DA - 1973// TI - Urease and ATP:urea amidolyase activity in unicellular algae BT - J Gen Microbio ID - Leftley1973 ER - TY - JOUR AU - Al-Houty, F. A. A. AU - Syrett, P. J. PY - 1984 DA - 1984// TI - The occurrence of urease/urea amidolyase and glycollate oxidase/dehydrogenase in Klebsormidium spp. and members of the Ulotrichales JO - European J of Phycology VL - 19 ID - Al-Houty1984 ER - TY - JOUR AU - Roon, R. J. AU - Hampshire, J. AU - Levenberg, B. PY - 1972 DA - 1972// TI - Urea amidolyase. The involvement of biotin in urea cleavage JO - J Biol Chem VL - 247 ID - Roon1972 ER - TY - JOUR AU - Cooper, T. G. AU - Lam, C. AU - Turoscy, V. PY - 1980 DA - 1980// TI - Structural analysis of the dur loci in S. cerevisiae: two domains of a single multifunctional gene JO - Genetics VL - 94 ID - Cooper1980 ER - TY - JOUR AU - Hodson, R. C. AU - Williams, S. K. AU - Davidson, W. R. PY - 1975 DA - 1975// TI - Metabolic control of urea catabolism in Chlamydomonas reinhardi and Chlorella pyrenoidosa JO - J Bacteriol VL - 121 ID - Hodson1975 ER - TY - JOUR AU - Kanamori, T. AU - Kanou, N. AU - Atomi, H. AU - Imanaka, T. PY - 2004 DA - 2004// TI - Enzymatic characterization of a prokaryotic urea carboxylase JO - J Bacteriol VL - 186 UR - https://doi.org/10.1128/JB.186.9.2532-2539.2004 DO - 10.1128/JB.186.9.2532-2539.2004 ID - Kanamori2004 ER - TY - JOUR AU - Jitrapakdee, S. AU - Wallace, J. C. PY - 2003 DA - 2003// TI - The biotin enzyme family: conserved structural motifs and domain rearrangements JO - Curr Protein Pept Sci VL - 4 UR - https://doi.org/10.2174/1389203033487199 DO - 10.2174/1389203033487199 ID - Jitrapakdee2003 ER - TY - JOUR AU - Hall, C. AU - Brachat, S. AU - Dietrich, F. S. PY - 2005 DA - 2005// TI - Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae JO - Eukaryot Cell VL - 4 UR - https://doi.org/10.1128/EC.4.6.1102-1115.2005 DO - 10.1128/EC.4.6.1102-1115.2005 ID - Hall2005 ER - TY - JOUR AU - Fitzpatrick, D. A. AU - Logue, M. E. AU - Butler, G. PY - 2008 DA - 2008// TI - Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis JO - BMC Evol Biol VL - 8 UR - https://doi.org/10.1186/1471-2148-8-181 DO - 10.1186/1471-2148-8-181 ID - Fitzpatrick2008 ER - TY - JOUR AU - Garcia-Vallve, S. AU - Romeu, A. AU - Palau, J. PY - 2000 DA - 2000// TI - Horizontal gene transfer of glycosyl hydrolases of the rumen fungi JO - Mol Biol Evol VL - 17 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026315 DO - 10.1093/oxfordjournals.molbev.a026315 ID - Garcia-Vallve2000 ER - TY - JOUR AU - Schmitt, I. AU - Lumbsch, H. T. PY - 2009 DA - 2009// TI - Ancient horizontal gene transfer from bacteria enhances biosynthetic capabilities of fungi JO - PLoS One VL - 4 UR - https://doi.org/10.1371/journal.pone.0004437 DO - 10.1371/journal.pone.0004437 ID - Schmitt2009 ER - TY - JOUR AU - Marcet-Houben, M. AU - Gabaldon, T. PY - 2010 DA - 2010// TI - Acquisition of prokaryotic genes by fungal genomes JO - Trends Genet VL - 26 UR - https://doi.org/10.1016/j.tig.2009.11.007 DO - 10.1016/j.tig.2009.11.007 ID - Marcet-Houben2010 ER - TY - JOUR AU - Marcet-Houben, M. AU - Gabaldon, T. PY - 2009 DA - 2009// TI - The tree versus the forest: the fungal tree of life and the topological diversity within the yeast phylome JO - PLoS One VL - 4 UR - https://doi.org/10.1371/journal.pone.0004357 DO - 10.1371/journal.pone.0004357 ID - Marcet-Houben2009 ER - TY - JOUR AU - Wang, H. AU - Xu, Z. AU - Gao, L. AU - Hao, B. PY - 2009 DA - 2009// TI - A fungal phylogeny based on 82 complete genomes using the composition vector method JO - BMC Evol Biol VL - 9 UR - https://doi.org/10.1186/1471-2148-9-195 DO - 10.1186/1471-2148-9-195 ID - Wang2009 ER - TY - JOUR AU - Oren, L. AU - Ezrati, S. AU - Cohen, D. AU - Sharon, A. PY - 2003 DA - 2003// TI - Early events in the Fusarium verticillioides-maize interaction characterized by using a green fluorescent protein-expressing transgenic isolate JO - Appl Environ Microbiol VL - 69 UR - https://doi.org/10.1128/AEM.69.3.1695-1701.2003 DO - 10.1128/AEM.69.3.1695-1701.2003 ID - Oren2003 ER - TY - JOUR AU - Enya, J. AU - Togawa, M. AU - Takeuchi, T. AU - Yoshida, S. AU - Tsushima, S. AU - Arie, T. AU - Sakai, T. PY - 2008 DA - 2008// TI - Biological and phylogenetic characterization of Fusarium oxysporum complex, which causes yellows on Brassica spp., and proposal of F. oxysporum f. sp. rapae, a novel forma specialis pathogenic on B. rapa in Japan JO - Phytopathology VL - 98 UR - https://doi.org/10.1094/PHYTO-98-4-0475 DO - 10.1094/PHYTO-98-4-0475 ID - Enya2008 ER - TY - JOUR AU - Gunawardena, U. AU - Rodriguez, M. AU - Straney, D. AU - Romeo, J. T. AU - VanEtten, H. D. AU - Hawes, M. C. PY - 2005 DA - 2005// TI - Tissue-specific localization of pea root infection by Nectria haematococca. Mechanisms and consequences JO - Plant Physiol VL - 137 UR - https://doi.org/10.1104/pp.104.056366 DO - 10.1104/pp.104.056366 ID - Gunawardena2005 ER - TY - CHAP AU - Odds, F. C. PY - 1988 DA - 1988// BT - Candida and candidiasis PB - Tindall CY - Bailliere ID - Odds1988 ER - TY - JOUR AU - DiCarlo, F. J. AU - Schultz, A. S. AU - Kent, A. M. PY - 1953 DA - 1953// TI - The mechanism of allantoin catabolism by yeast JO - Arch Biochem Biophys VL - 44 UR - https://doi.org/10.1016/0003-9861(53)90064-2 DO - 10.1016/0003-9861(53)90064-2 ID - DiCarlo1953 ER - TY - JOUR AU - Zhang, Y. AU - Rodionov, D. A. AU - Gelfand, M. S. AU - Gladyshev, V. N. PY - 2009 DA - 2009// TI - Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-78 DO - 10.1186/1471-2164-10-78 ID - Zhang2009 ER - TY - JOUR AU - De Baere, T. AU - Verhelst, R. AU - Labit, C. AU - Verschraegen, G. AU - Wauters, G. AU - Claeys, G. AU - Vaneechoutte, M. PY - 2004 DA - 2004// TI - Bacteremic infection with Pantoea ananatis JO - J Clin Microbiol VL - 42 UR - https://doi.org/10.1128/JCM.42.9.4393-4395.2004 DO - 10.1128/JCM.42.9.4393-4395.2004 ID - De Baere2004 ER - TY - JOUR AU - De Maayer, P. AU - Chan, W. Y. AU - Venter, S. N. AU - Toth, I. K. AU - Birch, P. R. AU - Joubert, F. AU - Coutinho, T. A. PY - 2010 DA - 2010// TI - Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback JO - J Bacteriol VL - 192 UR - https://doi.org/10.1128/JB.00060-10 DO - 10.1128/JB.00060-10 ID - De Maayer2010 ER - TY - JOUR AU - Carter, E. L. AU - Flugga, N. AU - Boer, J. L. AU - Mulrooney, S. B. AU - Hausinger, R. P. PY - 2009 DA - 2009// TI - Interplay of metal ions and urease JO - Metallomics VL - 1 UR - https://doi.org/10.1039/b903311d DO - 10.1039/b903311d ID - Carter2009 ER - TY - JOUR AU - Labadorf, A. AU - Link, A. AU - Rogers, M. F. AU - Thomas, J. AU - Reddy, A. S. AU - Ben-Hur, A. PY - 2010 DA - 2010// TI - Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii JO - BMC Genomics VL - 11 UR - https://doi.org/10.1186/1471-2164-11-114 DO - 10.1186/1471-2164-11-114 ID - Labadorf2010 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Ciccarelli, F. D. AU - Doerks, T. AU - von Mering, C. AU - Creevey, C. J. AU - Snel, B. AU - Bork, P. PY - 2006 DA - 2006// TI - Toward automatic reconstruction of a highly resolved tree of life JO - Science VL - 311 UR - https://doi.org/10.1126/science.1123061 DO - 10.1126/science.1123061 ID - Ciccarelli2006 ER - TY - JOUR AU - Katoh, K. AU - Misawa, K. AU - Kuma, K. AU - Miyata, T. PY - 2002 DA - 2002// TI - MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/gkf436 DO - 10.1093/nar/gkf436 ID - Katoh2002 ER - TY - JOUR AU - Felsenstein, J. PY - 1981 DA - 1981// TI - Evolutionary trees from DNA sequences: a maximum likelihood approach JO - J Mol Evol VL - 17 UR - https://doi.org/10.1007/BF01734359 DO - 10.1007/BF01734359 ID - Felsenstein1981 ER - TY - JOUR AU - Stamatakis, A. PY - 2006 DA - 2006// TI - RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl446 DO - 10.1093/bioinformatics/btl446 ID - Stamatakis2006 ER - TY - JOUR AU - Whelan, S. AU - Goldman, N. PY - 2001 DA - 2001// TI - A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach JO - Mol Biol Evol VL - 18 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003851 DO - 10.1093/oxfordjournals.molbev.a003851 ID - Whelan2001 ER - TY - JOUR AU - Felsenstein, J. PY - 1989 DA - 1989// TI - Phylogeny Inference Package (Version 3.2) JO - Cladistics VL - 5 ID - Felsenstein1989 ER - TY - JOUR AU - Rzhetsky, A. AU - Nei, M. PY - 1992 DA - 1992// TI - Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference JO - J Mol Evol VL - 35 UR - https://doi.org/10.1007/BF00161174 DO - 10.1007/BF00161174 ID - Rzhetsky1992 ER - TY - JOUR AU - Tamura, K. AU - Dudley, J. AU - Nei, M. AU - Kumar, S. PY - 2007 DA - 2007// TI - MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm092 DO - 10.1093/molbev/msm092 ID - Tamura2007 ER - TY - JOUR AU - Jones, D. T. AU - Taylor, W. R. AU - Thornton, J. M. PY - 1992 DA - 1992// TI - The rapid generation of mutation data matrices from protein sequences JO - Comput Appl Biosci VL - 8 ID - Jones1992 ER - TY - STD TI - Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, et al: InterPro: the integrative protein signature database. Nucleic Acids Res. 2009, D211-215. 10.1093/nar/gkn785. 37 Database ID - ref38 ER - TY - JOUR AU - Lucking, R. AU - Huhndorf, S. AU - Pfister, D. H. AU - Plata, E. R. AU - Lumbsch, H. T. PY - 2009 DA - 2009// TI - Fungi evolved right on track JO - Mycologia VL - 101 UR - https://doi.org/10.3852/09-016 DO - 10.3852/09-016 ID - Lucking2009 ER -