Table 1 Genes with evidence for positive selection in seagrasses
From: Back to the sea twice: identifying candidate plant genes for molecular evolution to marine life
Branch | Cluster ID | Arabidopsis gene description | p-value |
|---|---|---|---|
LCA | orthomcl1184 | 60 S ribosomal protein L14 (RPL14A) | <0.001 |
LCA | orthomcl3768 | proteasome maturation factor UMP1 family protein | 0.001 |
LCA | orthomcl1461 | annexin 7, calcium-dependent phospholipid binding (ANNAT7) | 0.001 |
LCA | orthomcl1674 | cytochrome c oxidase 6B (COX6B) | 0.002 |
LCA | orthomcl538 | chaperonin 20, calmodulin binding (CPN20) | 0.003 |
LCA | orthomcl4618 | PSAE-1 | 0.004 |
LCA | orthomcl5414 | light harvesting complex PSII 5 (LHCB5) | 0.004 |
LCA | orthomcl1707 | ubiquinol-cytochrome C reductase subunit, mitochondrial | 0.005 |
LCA | orthomcl3901 | nuclear encoded CLP protease 5 (CLPP5) | 0.006 |
LCA | orthomcl1048 | ferredoxin 3 (ATFD3) | 0.007 |
LCA | orthomcl4111 | calmodulin binding (PSAN) | 0.007 |
LCA | orthomcl1171 | protease inhibitor/seed storage/lipid transfer protein (LTP) | 0.007 |
LCA | orthomcl1074 | 60 S ribosomal protein L37 (RPL37A) | 0.007 |
LCA | orthomcl433 | lipid transfer protein 3, lipid binding (LTP3) | 0.008 |
LCA | orthomcl1625 | fructose-bisphosphate aldolase, putative | 0.008 |
LCA | orthomcl3789 | PHD finger protein-related | 0.009 |
LCA | orthomcl801 | 60 S ribosomal protein L9 (RPL90B) | 0.013 |
LCA | orthomcl1693 | UDP-D-apiose/UDP-D-xylose synthase 1 (AXS1) | 0.016 |
LCA | orthomcl1038 | 60 S ribosomal protein L18 (RPL18C) | 0.020 |
LCA | orthomcl922 | glutaredoxin 4, metal ion binding (GRX4) | 0.021 |
LCA | orthomcl1070 | 60 S ribosomal protein L6 (RPL6B) | 0.022 |
LCA | orthomcl2948 | scorbate peroxidase 4 (APX4) | 0.025 |
LCA | orthomcl1822 | FK506 binding/peptidyl-prolyl cis-trans isomerase (FKBP15-2) | 0.025 |
LCA | orthomcl626 | 40 S ribosomal protein S3A (RPS3aB) | 0.025 |
LCA | orthomcl3845 | copper ion bindng/electron carrier (DRT112) | 0.026 |
LCA | orthomcl1565 | 40 S ribosomal protein S15 (RPS15C) | 0.028 |
LCA | orthomcl4326 | PQ-loop repeat family protein/transmembrane family protein | 0.041 |
Po | orthomcl469 | copper ion binding/glutamate-ammninoa ligase (ATGSR1) | <0.001 |
Po | orthomcl1126 | cytidylate kinase/uridylate kinase (PYR6) | 0.001 |
Po | orthomcl4752 | glycine dehydrogenase, decarboxylating (GDCH) | 0.002 |
Po | orthomcl1625 | fructose-bisphosphate aldolase, putative | 0.003 |
Po | orthomcl1125 | 40 S ribosomal protein S24 (RPS24B) | 0.005 |
Po | orthomcl1070 | 60 S ribosomal protein L6 (RPL6B) | 0.007 |
Po | orthomcl1673 | cytochrome c-2 (CYTC-2) | 0.008 |
Po | orthomcl1473 | C2 domain-containing protein | 0.011 |
Po | orthomcl1450 | fructose-bisphosphate aldolase, putative | 0.014 |
Po | orthomcl824 | mitochondrial ATP synthase g subunit family protein | 0.014 |
Po | orthomcl4197 | enhancer of sos3-1, metal ion binding/protein binding (ENH1) | 0.018 |
Po | orthomcl4326 | PQ-loop repeat family protein/transmembrane family protein | 0.022 |
Po | orthomcl1896 | microsomal glutathione s-transferase, putative | 0.028 |
Po | orthomcl5121 | frostbite 1, NADH dehydrogenase, ubiquinone (FRO1) | 0.028 |
Po | orthomcl2960 | unknown protein | 0.029 |
Po | orthomcl1930 | cornichon family protein | 0.041 |
Po | orthomcl433 | lipid transfer protein 3, lipid binding (LTP3) | 0.043 |
Po | orthomcl1635 | histone H1-3 (HIS1-3) | 0.046 |
Zm | orthomcl2446 | photosystem I subunit L (PSAL) | 0.001 |
Zm | orthomcl1812 | PS II subunit O-2, oxygen-evolving/poly(U) binding (PSBO2) | 0.003 |
Zm | orthomcl538 | chaperonin 20, calmodulin binding (CPN20) | 0.003 |
Zm | orthomcl3901 | nuclear encoded CLP protease 5 (CLPP5) | 0.004 |
Zm | orthomcl433 | lipid transfer protein 3, lipid binding (LTP3) | 0.005 |
Zm | orthomcl414 | structural constituent of ribosome | 0.005 |
Zm | orthomcl4111 | calmodulin binding (PSAN) | 0.007 |
Zm | orthomcl591 | RuBisCO activator (RCA) | 0.008 |
Zm | orthomcl1057 | photosystem II subunit R (PSBR) | 0.009 |
Zm | orthomcl953 | dormancy-associated protein-like 1 (DYL1) | 0.010 |
Zm | orthomcl3260 | malate dehydrogenase, cytosolic, putative | 0.012 |
Zm | orthomcl1450 | fructose-bisphosphate aldolase, putative | 0.014 |
Zm | orthomcl5948 | prefoldin 6, unfolded protein binding (PDF6) | 0.015 |
Zm | orthomcl1565 | 40 S ribosomal protein S15 (RPS15C) | 0.017 |
Zm | orthomcl1808 | universal stress protein (USP) family protein | 0.031 |
Zm | orthomcl824 | mitochondrial ATP synthase g subunit family protein | 0.032 |
Zm | orthomcl4705 | chlorophyll binding (LHCA3) | 0.043 |
Zm | orthomcl3845 | copper ion bindng/electron carrier (DRT112) | 0.044 |
Zm | orthomcl4618 | PSAE-1 | 0.045 |
Zm | orthomcl3789 | PHD finger protein-related | 0.049 |