TY - JOUR AU - Stavnezer, J. AU - Amemiya, C. T. PY - 2004 DA - 2004// TI - Evolution of isotype switching JO - Semin Immunol VL - 16 UR - https://doi.org/10.1016/j.smim.2004.08.005 DO - 10.1016/j.smim.2004.08.005 ID - Stavnezer2004 ER - TY - CHAP AU - Cognè, M. AU - Birshtein, B. K. ED - Honjo, T. ED - Alt, F. W. ED - Neuberger, M. S. PY - 2004 DA - 2004// TI - Regulation of Class Switch Recombination BT - Molecular biology of B cells PB - Elsevier CY - New York UR - https://doi.org/10.1016/B978-012053641-2/50020-4 DO - 10.1016/B978-012053641-2/50020-4 ID - Cognè2004 ER - TY - JOUR AU - Woof, J. M. AU - Kerr, M. A. PY - 2004 DA - 2004// TI - IgA function--variations on a theme JO - Immunology VL - 113 UR - https://doi.org/10.1111/j.1365-2567.2004.01958.x DO - 10.1111/j.1365-2567.2004.01958.x ID - Woof2004 ER - TY - JOUR AU - Pettersson, S. AU - Cook, G. P. AU - Bruggemann, M. AU - Williams, G. T. AU - Neuberger, M. S. PY - 1990 DA - 1990// TI - A second B cell-specific enhancer 3' of the immunoglobulin heavy-chain locus JO - Nature VL - 344 UR - https://doi.org/10.1038/344165a0 DO - 10.1038/344165a0 ID - Pettersson1990 ER - TY - JOUR AU - Lieberson, R. AU - Giannini, S. L. AU - Birshtein, B. K. AU - Eckhardt, L. A. PY - 1991 DA - 1991// TI - An enhancer at the 3' end of the mouse immunoglobulin heavy chain locus JO - Nucleic acids research VL - 19 UR - https://doi.org/10.1093/nar/19.4.933 DO - 10.1093/nar/19.4.933 ID - Lieberson1991 ER - TY - JOUR AU - Chauveau, C. AU - Cogne, M. PY - 1996 DA - 1996// TI - Palindromic structure of the IgH 3'locus control region JO - Nature genetics VL - 14 UR - https://doi.org/10.1038/ng0996-15 DO - 10.1038/ng0996-15 ID - Chauveau1996 ER - TY - JOUR AU - Saleque, S. AU - Singh, M. AU - Little, R. D. AU - Giannini, S. L. AU - Michaelson, J. S. AU - Birshtein, B. K. PY - 1997 DA - 1997// TI - Dyad symmetry within the mouse 3' IgH regulatory region includes two virtually identical enhancers (C alpha3'E and hs3) JO - Journal of immunology VL - 158 ID - Saleque1997 ER - TY - JOUR AU - Chen, C. AU - Birshtein, B. K. PY - 1997 DA - 1997// TI - Virtually identical enhancers containing a segment of homology to murine 3'IgH-E(hs1,2) lie downstream of human Ig C alpha 1 and C alpha 2 genes JO - J Immunol VL - 159 ID - Chen1997 ER - TY - JOUR AU - Laurencikiene, J. AU - Tamosiunas, V. AU - Severinson, E. PY - 2007 DA - 2007// TI - Regulation of epsilon germline transcription and switch region mutations by IgH locus 3' enhancers in transgenic mice JO - Blood VL - 109 UR - https://doi.org/10.1182/blood-2006-02-005355 DO - 10.1182/blood-2006-02-005355 ID - Laurencikiene2007 ER - TY - JOUR AU - Gostissa, M. AU - Yan, C. T. AU - Bianco, J. M. AU - Cogne, M. AU - Pinaud, E. AU - Alt, F. W. PY - 2009 DA - 2009// TI - Long-range oncogenic activation of Igh-c-myc translocations by the Igh 3' regulatory region JO - Nature VL - 462 UR - https://doi.org/10.1038/nature08633 DO - 10.1038/nature08633 ID - Gostissa2009 ER - TY - STD TI - Vincent-Fabert C, Fiancette R, Cogne M, Pinaud E, Denizot Y: The IgH 3' regulatory region and its implication in lymphomagenesis. Eur J Immunol. 40 (12): 3306-3311. 10.1002/eji.201040778. ID - ref11 ER - TY - JOUR AU - Wuerffel, R. AU - Wang, L. AU - Grigera, F. AU - Manis, J. AU - Selsing, E. AU - Perlot, T. AU - Alt, F. W. AU - Cogne, M. AU - Pinaud, E. AU - Kenter, A. L. PY - 2007 DA - 2007// TI - S-S synapsis during class switch recombination is promoted by distantly located transcriptional elements and activation-induced deaminase JO - Immunity VL - 27 UR - https://doi.org/10.1016/j.immuni.2007.09.007 DO - 10.1016/j.immuni.2007.09.007 ID - Wuerffel2007 ER - TY - JOUR AU - Dunnick, W. A. AU - Collins, J. T. AU - Shi, J. AU - Westfield, G. AU - Fontaine, C. AU - Hakimpour, P. AU - Papavasiliou, F. N. PY - 2009 DA - 2009// TI - Switch recombination and somatic hypermutation are controlled by the heavy chain 3' enhancer region JO - J Exp Med VL - 206 UR - https://doi.org/10.1084/jem.20091280 DO - 10.1084/jem.20091280 ID - Dunnick2009 ER - TY - JOUR AU - Vincent-Fabert, C. AU - Fiancette, R. AU - Pinaud, E. AU - Truffinet, V. AU - Cogne, N. AU - Cogne, M. AU - Denizot, Y. PY - 2010 DA - 2010// TI - Genomic deletion of the whole IgH 3' regulatory region (hs3a, hs1,2, hs3b, and hs4) dramatically affects class switch recombination and Ig secretion to all isotypes JO - Blood VL - 116 UR - https://doi.org/10.1182/blood-2010-01-264689 DO - 10.1182/blood-2010-01-264689 ID - Vincent-Fabert2010 ER - TY - JOUR AU - Giambra, V. AU - Volpi, S. AU - Emelyanov, A. V. AU - Pflugh, D. AU - Bothwell, A. L. AU - Norio, P. AU - Fan, Y. AU - Ju, Z. AU - Skoultchi, A. I. AU - Hardy, R. R. PY - 2008 DA - 2008// TI - Pax5 and linker histone H1 coordinate DNA methylation and histone modifications in the 3' regulatory region of the immunoglobulin heavy chain locus JO - Mol Cell Biol VL - 28 UR - https://doi.org/10.1128/MCB.00233-08 DO - 10.1128/MCB.00233-08 ID - Giambra2008 ER - TY - JOUR AU - Frezza, D. AU - Giambra, V. AU - Mattioli, C. AU - Piccoli, K. AU - Massoud, R. AU - Siracusano, A. AU - Di Giannantonio, M. AU - Birshtein, B. K. AU - Rubino, I. A. PY - 2009 DA - 2009// TI - Allelic frequencies of 3' Ig heavy chain locus enhancer HS1,2-A associated with Ig levels in patients with schizophrenia JO - Int J Immunopathol Pharmacol VL - 22 ID - Frezza2009 ER - TY - JOUR AU - Giambra, V. AU - Cianci, R. AU - Lolli, S. AU - Mattioli, C. AU - Tampella, G. AU - Cattalini, M. AU - Kilic, S. S. AU - Pandolfi, F. AU - Plebani, A. AU - Frezza, D. PY - 2009 DA - 2009// TI - Allele *1 of HS1.2 enhancer associates with selective IgA deficiency and IgM concentration JO - J Immunol VL - 183 UR - https://doi.org/10.4049/jimmunol.0902426 DO - 10.4049/jimmunol.0902426 ID - Giambra2009 ER - TY - JOUR AU - Tolusso, B. AU - Frezza, D. AU - Mattioli, C. AU - Fedele, A. L. AU - Bosello, S. AU - Faustini, F. AU - Peluso, G. AU - Giambra, V. AU - Pietrapertosa, D. AU - Morelli, A. PY - 2009 DA - 2009// TI - Allele *2 of the HS1,2A enhancer of the Ig regulatory region associates with rheumatoid arthritis JO - Ann Rheum Dis VL - 68 UR - https://doi.org/10.1136/ard.2008.095414 DO - 10.1136/ard.2008.095414 ID - Tolusso2009 ER - TY - JOUR AU - Cianci, R. AU - Giambra, V. AU - Mattioli, C. AU - Esposito, M. AU - Cammarota, G. AU - Scibilia, G. AU - Magazzu, G. AU - Orlando, A. AU - Sandri, G. AU - Bianchi, L. PY - 2008 DA - 2008// TI - Increased frequency of Ig heavy-chain HS1,2-A enhancer *2 allele in dermatitis herpetiformis, plaque psoriasis, and psoriatic arthritis JO - J Invest Dermatol VL - 128 UR - https://doi.org/10.1038/jid.2008.40 DO - 10.1038/jid.2008.40 ID - Cianci2008 ER - TY - JOUR AU - Frezza, D. AU - Giambra, V. AU - Cianci, R. AU - Fruscalzo, A. AU - Giufre, M. AU - Cammarota, G. AU - Martinez-Labarga, C. AU - Rickards, O. AU - Scibilia, G. AU - Sferlazzas, C. PY - 2004 DA - 2004// TI - Increased frequency of the immunoglobulin enhancer HS1,2 allele 2 in coeliac disease JO - Scand J Gastroenterol VL - 39 UR - https://doi.org/10.1080/00365520410007999 DO - 10.1080/00365520410007999 ID - Frezza2004 ER - TY - JOUR AU - Giambra, V. AU - Fruscalzo, A. AU - Giufre, M. AU - Martinez-Labarga, C. AU - Favaro, M. AU - Rocchi, M. AU - Frezza, D. PY - 2005 DA - 2005// TI - Evolution of human IgH3'EC duplicated structures: both enhancers HS1,2 are polymorphic with variation of transcription factor's consensus sites JO - Gene VL - 346 UR - https://doi.org/10.1016/j.gene.2004.10.009 DO - 10.1016/j.gene.2004.10.009 ID - Giambra2005 ER - TY - JOUR AU - Chauveau, C. AU - Cogne, M. PY - 1996 DA - 1996// TI - Palindromic structure of the IgH 3'locus control region JO - Nat Genet VL - 14 UR - https://doi.org/10.1038/ng0996-15 DO - 10.1038/ng0996-15 ID - Chauveau1996 ER - TY - JOUR AU - Saleque, S. AU - Singh, M. AU - Little, R. D. AU - Giannini, S. L. AU - Michaelson, J. S. AU - Birshtein, B. K. PY - 1997 DA - 1997// TI - Dyad symmetry within the mouse 3' IgH regulatory region includes two virtually identical enhancers (C alpha3'E and hs3) JO - J Immunol VL - 158 ID - Saleque1997 ER - TY - JOUR AU - Sepulveda, M. A. AU - Garrett, F. E. AU - Price-Whelan, A. AU - Birshtein, B. K. PY - 2005 DA - 2005// TI - Comparative analysis of human and mouse 3' Igh regulatory regions identifies distinctive structural features JO - Mol Immunol VL - 42 UR - https://doi.org/10.1016/j.molimm.2004.09.006 DO - 10.1016/j.molimm.2004.09.006 ID - Sepulveda2005 ER - TY - JOUR AU - Meireles-Filho, A. C. AU - Stark, A. PY - 2009 DA - 2009// TI - Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information JO - Curr Opin Genet Dev VL - 19 UR - https://doi.org/10.1016/j.gde.2009.10.006 DO - 10.1016/j.gde.2009.10.006 ID - Meireles-Filho2009 ER - TY - JOUR AU - Gambon-Deza, F. AU - Sanchez-Espinel, C. AU - Magadan-Mompo, S. PY - 2009 DA - 2009// TI - The immunoglobulin heavy chain locus in the platypus (Ornithorhynchus anatinus) JO - Mol Immunol VL - 46 UR - https://doi.org/10.1016/j.molimm.2009.05.025 DO - 10.1016/j.molimm.2009.05.025 ID - Gambon-Deza2009 ER - TY - JOUR AU - Green, R. E. AU - Krause, J. AU - Briggs, A. W. AU - Maricic, T. AU - Stenzel, U. AU - Kircher, M. AU - Patterson, N. AU - Li, H. AU - Zhai, W. AU - Fritz, M. H. PY - 2010 DA - 2010// TI - A draft sequence of the Neandertal genome JO - Science VL - 328 UR - https://doi.org/10.1126/science.1188021 DO - 10.1126/science.1188021 ID - Green2010 ER - TY - JOUR AU - Guglielmi, L. AU - Truffinet, V. AU - Magnoux, E. AU - Cogne, M. AU - Denizot, Y. PY - 2004 DA - 2004// TI - The polymorphism of the locus control region lying downstream the human IgH locus is restricted to hs1,2 but not to hs3 and hs4 enhancers JO - Immunol Lett VL - 94 UR - https://doi.org/10.1016/j.imlet.2004.04.003 DO - 10.1016/j.imlet.2004.04.003 ID - Guglielmi2004 ER - TY - JOUR AU - Mills, F. C. AU - Harindranath, N. AU - Mitchell, M. AU - Max, E. E. PY - 1997 DA - 1997// TI - Enhancer complexes located downstream of both human immunoglobulin Calpha genes JO - J Exp Med VL - 186 UR - https://doi.org/10.1084/jem.186.6.845 DO - 10.1084/jem.186.6.845 ID - Mills1997 ER - TY - JOUR AU - Denizot, Y. AU - Pinaud, E. AU - Aupetit, C. AU - Le Morvan, C. AU - Magnoux, E. AU - Aldigier, J. C. AU - Cogne, M. PY - 2001 DA - 2001// TI - Polymorphism of the human alpha1 immunoglobulin gene 3' enhancer hs1,2 and its relation to gene expression JO - Immunology VL - 103 UR - https://doi.org/10.1046/j.1365-2567.2001.01217.x DO - 10.1046/j.1365-2567.2001.01217.x ID - Denizot2001 ER - TY - JOUR AU - Osborne, C. S. AU - Chakalova, L. AU - Mitchell, J. A. AU - Horton, A. AU - Wood, A. L. AU - Bolland, D. J. AU - Corcoran, A. E. AU - Fraser, P. PY - 2007 DA - 2007// TI - Myc dynamically and preferentially relocates to a transcription factory occupied by Igh JO - PLoS Biol VL - 5 UR - https://doi.org/10.1371/journal.pbio.0050192 DO - 10.1371/journal.pbio.0050192 ID - Osborne2007 ER - TY - JOUR AU - Aupetit, C. AU - Drouet, M. AU - Pinaud, E. AU - Denizot, Y. AU - Aldigier, J. C. AU - Bridoux, F. AU - Cogne, M. PY - 2000 DA - 2000// TI - Alleles of the alpha1 immunoglobulin gene 3' enhancer control evolution of IgA nephropathy toward renal failure JO - Kidney Int VL - 58 UR - https://doi.org/10.1046/j.1523-1755.2000.00253.x DO - 10.1046/j.1523-1755.2000.00253.x ID - Aupetit2000 ER - TY - JOUR AU - Garrett, F. E. AU - Emelyanov, A. V. AU - Sepulveda, M. A. AU - Flanagan, P. AU - Volpi, S. AU - Li, F. AU - Loukinov, D. AU - Eckhardt, L. A. AU - Lobanenkov, V. V. AU - Birshtein, B. K. PY - 2005 DA - 2005// TI - Chromatin architecture near a potential 3' end of the igh locus involves modular regulation of histone modifications during B-Cell development and in vivo occupancy at CTCF sites JO - Mol Cell Biol VL - 25 UR - https://doi.org/10.1128/MCB.25.4.1511-1525.2005 DO - 10.1128/MCB.25.4.1511-1525.2005 ID - Garrett2005 ER - TY - JOUR AU - Krumsiek, J. AU - Arnold, R. AU - Rattei, T. PY - 2007 DA - 2007// TI - Gepard: a rapid and sensitive tool for creating dotplots on genome scale JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm039 DO - 10.1093/bioinformatics/btm039 ID - Krumsiek2007 ER - TY - CHAP AU - Thompson, J. D. AU - Gibson, T. J. AU - Higgins, D. G. PY - 2002 DA - 2002// TI - Multiple sequence alignment using ClustalW and ClustalX BT - Curr Protoc Bioinformatics ID - Thompson2002 ER - TY - JOUR AU - Katoh, K. AU - Asimenos, G. AU - Toh, H. PY - 2009 DA - 2009// TI - Multiple alignment of DNA sequences with MAFFT JO - Methods Mol Biol VL - 537 UR - https://doi.org/10.1007/978-1-59745-251-9_3 DO - 10.1007/978-1-59745-251-9_3 ID - Katoh2009 ER - TY - JOUR AU - Wheeler, T. J. AU - Kececioglu, J. D. PY - 2007 DA - 2007// TI - Multiple alignment by aligning alignments JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm226 DO - 10.1093/bioinformatics/btm226 ID - Wheeler2007 ER - TY - JOUR AU - Keane, T. M. AU - Creevey, C. J. AU - Pentony, M. M. AU - Naughton, T. J. AU - McLnerney, J. O. PY - 2006 DA - 2006// TI - Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified JO - BMC Evol Biol VL - 6 UR - https://doi.org/10.1186/1471-2148-6-29 DO - 10.1186/1471-2148-6-29 ID - Keane2006 ER - TY - JOUR AU - Keane, T. M. AU - Naughton, T. J. AU - McInerney, J. O. PY - 2007 DA - 2007// TI - MultiPhyl: a high-throughput phylogenomics webserver using distributed computing JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm359 DO - 10.1093/nar/gkm359 ID - Keane2007 ER -