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Table 3 Bioinformatic results for proteins involved the RanGTP-independent mRNA export pathway

From: Comparative genomics of proteins involved in RNA nucleocytoplasmic export

    Opisthokonta Amo Plantae Chromalveolata Excavata
   Queries Hsa Cin Dme Cel Mbr Cgl Afu Spo Cne Ecu Ddi Ehi Ath Osa Pop Ppa Cre Vca Cme Ehu Tpa Pfa Tgo Cpa Pte Tth Ptr Tps Pin Lma Tbr Ngr Gla Tva
  Hsa_CETN3 1 1 4 1 1 1 4 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
   Sce_Cdc31p 1 1 4 1 1 1 4 1 1 2 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
   Hsa_MCM3AP 1 3 5 5 5 5 5 5 5 5 5 5 4 5 5 5 5 5 5 5 NC NC 5 5 5 5 5 5 5 NC NC 5 NC 5
   Sce_Sac3p 4 5 5 5 5 1 5 4 5 5 5 NC 5 5 5 5 5 5 5 5 NC NC NC NC NC NC 5 5 5 NC NC 4 NC 5
TREX-2                                    
   Hsa-no ortholog                                   
   Sce_Thp1p 4 4 3 3 3 1 NC 3 NC NC 3 NC 3 4 NC 4 NC NC 3 NC NC NC NC NC 3 NC 4 4 4 NC NC 4 NC NC
   Hsa-no ortholog                                   
   Sce_Sus1p 2 1 2 NC 2 NC NC 2 2 NC 2 NC NC NC 2 2 3 NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC
   Hsa_THOC2 1 1 1 2 4 3 4 2 4 NC 4 5 2 2 2 2 NC 4 5 4 4 5 4 NC 3 3 3 3 2 NC NC 3 NC NC
   Sce_Rlr1p 3 3 3 3 4 1 4 3 3 NC 4 5 3 3 4 3 NC 4 NC NC NC 5 NC NC 4 4 4 4 4 NC NC 4 NC 4
   Hsa-no ortholog                                   
   Sce_Tho1p NC NC NC NC NC 2 NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC 5 NC NC NC NC NC NC
   Hsa-no ortholog                                   
   Sce_Hpr1p NC NC NC NC NC 2 NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC
   Hsa-no ortholog                                   
   Sce_Mft1p NC NC NC NC NC 2 NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC
THO                                    
   Hsa-no ortholog                                   
   Sce_Thp2p NC NC NC NC NC 1 NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC
   Hsa_UAP56 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 1 2 1
   Sce_Sub2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 1 2 1
  TREX Hsa-no ortholog                                   
   Sce_Yra1p NC NC 3 2 NC 1 3 3 2 NC NC 4 NC 4 2 2 NC NC NC NC NC NC NC NC NC NC NC NC 3 NC NC NC NC 4
   Hsa_THOC3 1 1 1 2 2 3 2 2 4 3 4 3 1 1 1 1 2 2 4 1 3 4 4 4 2 2 2 4 2 3 4 4 3 3
   Sce_Tex1p 3 5 3 3 3 1 NC 4 4 NC 3 5 3 3 3 3 4 NC 4 NC 3 NC NC NC 3 3 NC NC 3 NC NC NC NC 5
  Hsa_TAP 1 2 2 2 3 3 2 2 3 NC 4 4 NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC 3 NC NC
   Sce_Mex67p 3 3 3 NC NC 1 2 3 3 NC 4 4 NC NC NC NC NC NC NC NC NC NC 5 5 NC NC NC NC NC 5 5 4 NC NC
mRNA transport adaptor                                    
   Hsa_p15 1 2 1 2 NC 3 1 4 2 NC 3 3 2 3 2 3 NC NC 3 NC 3 NC NC 3 NC NC NC NC 3 2 2 3 NC 3
   Sce_Mtr2p NC NC NC NC NC 1 NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC
  Hsa_DDX19 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 1 2
   Sce_Dbp5p 1 1 1 1 1 1 1 1 1 2 1 2 2 2 2 1 1 1 1 2 1 4 1 1 1 2 2 2 1 2 2 1 2 1
   Hsa-no ortholog                                   
   Sce_Gle1p 4 3 3 NC NC 1 NC 2 3 NC NC NC NC 3 NC NC 5 NC 4 NC NC NC NC NC NC NC NC NC NC NC NC 4 NC NC
   Hsa_RAE1 1 1 1 1 2 2 2 1 1 2 1 3 1 1 1 1 1 1 2 2 2 4 2 2 4 2 1 1 1 3 3 2 3 3
   Sce_Gle2p 2 2 1 2 2 1 1 1 1 2 1 3 2 1 1 1 1 1 2 2 2 NC 2 1 4 2 1 1 1 3 2 2 3 2
Additional export factors                                    
   Hsa_TPR 1 5 3 4 NC 4 3 5 5 NC 4 NC 3 5 3 5 NC 4 NC NC NC NC NC NC NC NC 3 3 3 NC NC 5 NC NC
   Sce_Mlp1p 2 4 3 NC NC 1 2 3 NC NC NC NC 4 NC 4 NC NC NC NC NC NC NC NC NC NC NC 5 4 5 NC NC 5 NC NC
   Hsa-no ortholog                                   
   Sce_Nab2p 4 NC NC NC NC 1 3 4 3 NC NC NC NC NC NC NC NC NC 3 NC NC NC 4 5 NC NC NC NC NC NC NC NC NC NC
   Hsa_HNRNPM 1 3 4 4 4 4 4 4 4 4 4 NC 4 4 4 4 4 4 4 4 4 4 4 4 NC 4 4 4 4 4 4 4 NC 4
   Sce_Gbp2p 4 2 4 4 3 2 3 3 4 4 4 4 4 4 4 4 4 4 4 3 4 4 4 4 4 4 4 4 3 4 2 4 4 4
  1. Results were ranked into 5 categories (1-5; with 1 being the most conserved). NC (Not Classified). We present results for a representative subset of species in here, and full results are presented in Table S2 (Additional File 1)