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Table 2 Bioinformatic results for proteins involved in the RanGTP-dependent RNA export pathways

From: Comparative genomics of proteins involved in RNA nucleocytoplasmic export

   Opisthokonta Amo Plantae Chromalveolata Excavata
  Queries Hsa Cin Dme Cel Mbr Cgl Afu Spo Cne Ecu Ddi Ehi Ath Osa Pop Ppa Cre Vca Cme Ehu Tpa Pfa Tgo Cpa Pte Tth Ptr Tps Pin Lma Tbr Ngr Gla Tva
  Hsa_RAN 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  Sce_Gsp1p 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  Hsa_Ranbp1 1 2 4 4 2 2 2 2 2 2 2 2 1 1 1 2 4 2 4 2 4 4 2 2 2 2 2 2 1 3 2 2 2 2
  Sce_Yrb1p 2 2 4 4 2 1 1 1 2 2 2 2 2 2 2 2 4 2 4 2 4 4 1 2 2 2 2 2 2 3 2 2 3 2
Ran cycle proteins                                    
  Hsa_RCC1 1 1 4 4 4 3 3 3 3 3 4 4 3 3 2 3 3 4 2 4 4 3 4 4 4 4 4 3 2 4 4 4 NC 4
  Sce_Srm1p 3 3 3 3 3 1 1 2 2 3 3 NC 3 3 3 3 3 3 4 3 4 4 4 4 3 4 4 3 3 4 4 3 NC 4
  Hsa_RANGAP 1 1 2 4 3 4 3 4 4 4 3 NC 3 3 3 3 4 4 3 4 NC NC NC NC 4 4 3 4 4 3 4 3 4 3
  Sce_Rna1 4 4 4 4 4 1 1 1 2 3 4 NC 4 4 4 4 NC 3 NC 4 NC NC NC NC 3 3 NC NC 4 NC NC NC NC NC
  Hsa_XPO5 1 3 2 5 3 3 3 3 5 5 3 NC 3 3 5 3 5 5 5 5 5 5 5 5 NC NC 5 5 3 5 5 3 NC 5
  Sce_Msn5p 3 5 NC NC 3 1 3 3 NC NC 3 NC NC NC NC 4 NC NC NC NC NC NC NC NC NC NC NC NC 3 NC NC 4 NC NC
Exportins Hsa_Xpot 1 1 4 3 3 2 3 2 3 NC 2 5 2 3 2 2 NC NC 3 4 NC 4 NC 5 NC NC 3 3 3 3 3 4 5 5
  Sce_Los1p 3 3 NC 3 4 1 3 3 3 NC 3 5 3 4 3 3 NC NC NC NC NC NC NC 5 NC NC NC NC 3 5 4 4 NC NC
  Hsa_XPO1 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 1 1 1 2 2 2 1 4 2 1 1 1 2 2 1 4 3
  Sce_Crm1p 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 1 1 2 2 2 2 2 4 2 1 1 1 3 2 1 4 3
  Hsa_EEFIA 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  Sce_Tef2p 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  Hsa_CBP20 1 1 1 1 4 4 2 1 2 2 4 2 4 4 4 2 1 4 1 4 4 4 4 4 1 4 2 2 4 1 2 4 NC 1
  Sce_Cbc2p 3 3 3 2 5 1 2 2 3 3 3 3 2 2 2 4 3 4 4 2 2 3 4 3 3 3 4 4 4 2 1 4 NC 2
  Hsa_CBP80 1 1 1 2 NC 3 3 3 3 NC 2 NC 2 2 2 2 4 4 4 3 NC NC 4 NC 3 NC NC NC 3 NC NC 3 NC NC
  Sce_Sto1p 4 5 3 3 NC 1 3 4 3 NC 4 NC 4 4 4 4 5 5 5 NC NC NC NC NC NC NC NC NC 4 NC NC NC NC NC
  Hsa_PHAX 1 3 2 4 NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC 5 5 NC 5 5 NC NC NC NC 5 NC NC NC NC NC
  Sce-no ortholog                                   
Additional export factors                                    
  Hsa_NMD3 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 4 1 1 1 2 4 4 1 1 1 1 1 1 1 1 1 2 2
  Sce_Nmd3p 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 4 1 1 1 2 4 4 1 1 1 1 1 1 1 1 1 2 2
  Hsa_ZNF622 1 1 2 3 2 3 2 2 2 NC 2 2 2 3 2 2 4 3 3 4 4 3 4 4 4 2 3 3 2 3 4 NC 3 4
  Sce_Rei1p 3 2 2 2 2 1 3 2 2 NC 2 3 2 2 3 2 3 4 3 4 3 5 5 3 3 2 2 4 2 3 3 NC 2 3
  Hsa-no ortholog                                   
  Sce_Arx1p 4 4 4 4 4 1 4 3 NC NC 4 4 4 4 4 4 5 4 4 4 4 4 4 4 4 5 4 4 4 4 4 4 NC NC
  Hsa-no ortholog                                   
  Sce_Alb1p NC NC NC NC NC 1 NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC NC
  1. Results were ranked into 5 categories (1-5; with 1 being the most conserved). NC (Not Classified). We present results for a representative subset of species in here, and full results are presented in Table S2 (Additional File 1)