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Table 2 Nucleotide diversity at OsAMT1;1 and at seven loci around it in O. sativa and O. rufipogon

From: Diversity and selective sweep in the OsAMT1;1genomic region of rice

Genes predicted Position a Length b O. sativa(n = 94)c O. rufipogon(n = 19)  
    Pi×103 Hd D1 D2 Pi×103 Hd D1 D2 The ratio of Pi d
Glutaredoxin subgroup I -101.9 853 1.21 0.516 1.38 -0.57 2.15 0.830 -2.02* -3.11** 0.563
C3HC4 type zinc finger family -74.1 757 0.06 0.042 -1.39 -2.80* 1.87 0.766 -1.31 -1.44 0.032
Lipase class 3 family -38.5 756 0.06 0.042 -1.39 -2.80* 1.81 0.754 -1.63 -2.17 0.033
Cupin superfamily -7.3 863 0.05 0.021 -1.39 -2.80* 1.72 0.865 -1.20 -1.44 0.029
OsAMT1;1 0 2688 0.08 0.123 -2.00* -3.13* 1.72 0.982 -1.59 -0.57 0.047
Hypothetical protein 12.4 877 0.02 0.021 -1.03 -2.02 1.65 0.807 -1.25 -0.88 0.012
Transcriptional corepressor
LEUNIG
27.5 638 0.13 0.042 -1.79* -3.84** 1.69 0.678 -1.21 -1.51 0.077
Expressed protein 49.5 832 2.01 0.576 0.52 -1.40 3.99 0.906 -0.50 -0.41 0.504
  1. a Position of sampled loci as far to the first nucleotide of OsAMT1;1 that was considered as 0 kb; b Length (bp) of sampled alignment regions is relative to Nipponbare genomic sequence; c Pi (π), nucleotide diversity per site; Hd, haplotype diversity; D1, Tajama's D; D2, Fu and Li's D*; *, ** significant at 0.05 and 0.02 level, respectively; d The relative ratio of Pi for O. sativa to O. rufipogon.