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Table 1 Nucleotide diversity and neutral test at OsAMT1;1

From: Diversity and selective sweep in the OsAMT1;1genomic region of rice

Test set a Entire sequenced region (2688 bp) Coding region (1494 bp) Non-coding region (1194 bp)
  S π×103 θ×103 D1 D2 S π×103 θ×103 D1 D2 S π×103 θ×103 D1 D2
All (n = 216) 32 0.37 2.01 -2.33** -2.01 10 0.16 1.12 -2.04* -0.10 22 0.63 3.13 -2.15** -2.57*
O. rufipogon (n = 19) 26 1.72 2.78 -1.59 -0.57 7 0.99 1.34 -1.22 0.79 19 2.65 4.60 -1.62 -1.16
O. sativa (n = 190) 7 0.04 0.45 -1.93* -3.58** 1 0.03 0.11 -0.77 0.45 6 0.06 0.87 -1.89* -4.08**
Indica (n = 102) 6 0.06 0.43 -1.90* -3.67** 1 0.05 0.13 -0.69 0.49 5 0.08 0.81 -1.90* -4.29**
Japonica (n = 85) 1 0.02 0.07 -0.90 0.50 0 0 0 NA NA 1 0.04 0.17 -0.91 0.50
  1. a n in parentheses is the number of accessions used; S, number of segregating sites; π, nucleotide diversity per site; θ, Watterson's estimator; D1, Tajama's D; D2, Fu and Li's D*; NA, not applied; *, ** significant at 0.05 and 0.01(or 0.02) level for Tajama's D (or Fu and Li's D*), respectively.