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Table 2 Haplotypes of the male-specific region of the Y-chromosome of Rupicapra (generated through the combination of the sequence of the SRY promoter and microsatellites UMN2303 and SRYM18), and frequencies across subspecies

From: Y-chromosome phylogeny in the evolutionary net of chamois (genus Rupicapra)

 

Haplotype description

Frequency

 

SRY promoter

UMN2303

 

SRYM18

  

R. pyrenaica

R. rupicapra

Haplotype

A/G

Size

Size

[TTC]m

SNP A/T

[T]n

par

pyr

orn

cat

rupW

rupC

rupE

tat

cap

bal

asi

cau

Y-Rpyr1

A

130

102

2

A

9

17 (3)

9 (4)

          

Y-Rpyr2

A

125

102

2

A

9

1 (1)

7 (3)

          

Y-Rpyr3

A

125

105

2

A

12

  

6 (1)

         

Y-RrupA1

G

125

109

3

T

13

    

1 (1)

6 (1)

1

  

1 (1)

  

Y-RrupA2

G

125

110

3

T

14

   

1 (1)

2 (1)

 

2 (1)

5 (4)

6 (4)

3 (2)

  

Y-RrupA3

G

125

111

3

T

15

    

5 (1)

4 (1)

      

Y-RrupA4

G

125

112

3

T

16

   

4 (1)

1 (1)

       

Y-RrupB1

G

125

111

4

T

12

           

3 (3)

Y-RrupB2

G

125

113

4

T

14

          

1 (1)

 

Y-RrupC

G

125

112

5

T

10

           

1 (1)

  1. The abbreviated name of the subspecies are: par, parva; pyr, pyrenaica; orn, ornata; cat, cartusiana; rupW, rupicapraW; rupC, rupicapraC; rupE, rupicapraE; tat, tatrica; cap, carpatica; bal, balcanica; asi, asiatica; and cau, caucasica. Number of samples sequenced for SRYM18 are given in parenthesis.
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BMC Ecology and Evolution

ISSN: 2730-7182

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