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Table 2 The impact of different priors on σ2 in the Gallotiinae dataset (independent rates analysis).

From: Rate variation and estimation of divergence times using strict and relaxed clocks

Gamma prior Codon 1 Codon 2 Codon 3 RNA stem RNA loop
G(0.5, 0.01) 0.1089
(0.003, 0.563)
0.2695
(0.004, 1.358)
0.066
(0.002, 0.237)
0.444
(0.017, 1.532)
0.168
(0.002, 0.611)
G(0.5, 0.1) 0.116
(0.002, 0.583)
0.150
(0.000, 1.001)
0.060
(0.000, 0.224)
0.423
(0.014, 1.468)
0.173
(0.005, 0.619)
G(0.5, 1) 0.091
(0.002, 0.448)
0.193
(0.001, 0.901)
0.060
(0.001, 0.215)
0.319
(0.008, 1.088)
0.150
(0.001, 0.541)
G(0.5, 10) 0.023
(0.000, 0.142)
0.051
(0.001, 0.224)
0.040
(0.001, 0.144)
0.0833
(0.002, 0.323)
0.062
(0.000, 0.236)
G(0.5, 100) 0.0055
(0.000, 0.025)
0.004
(0.000, 0.023)
0.007
(0.000, 0.032)
0.006
(0.000, 0.028)
0.007
(0.000, 0.031)
  1. Posterior means and 95% intervals (in parentheses) on σ2 are shown for each data partition.