Table 2 IS elements in the A. asiaticus 5a2 genome
IS element | IS family | Number of ORFs (predicted translational frameshift) | Length of IS element [bp] | Inverted repeats [bp]a | Direct repeats [bp]b | G+C content of IS element [%] (range) | Length of transposase [amino acids] | Number of full-length IS element copies (conservation on DNA level) | Number of partial IS element copies | Number of full-length IS element copies with intact transposase genes (conservation on protein level) |
|---|---|---|---|---|---|---|---|---|---|---|
ISCaa1 c | IS1 | 1 | 759 | 17/21 | 0 | 35.7 | 232 | 1 | 6 | 1 |
ISCaa2 | IS5, ISL2 group | 2 (-1) | 916 | 19/20 | 0 | 36.3 | 275 | 3 (99-100%) | 3 | 3 (99-100%) |
ISCaa3 | IS5 ISL2 group | 2 (-1) | 914 | 22/23 | 0 | 36.5 | 275 | 10 (99-100%) | 5 | 9 (99-100%) |
ISCaa4 | IS1 | 2 (-1) | 732 | 17/22 | 8/10 | 37.4 (36.2 - 38.0) | 226 | 24 (85-100%) | 8 | 21 (96-100%) |
ISCaa5 | IS982 | 1 | 932 | 18/21 | 0 | 38.2 | 274 | 10 (99-100%) | 24 | 8 (99-100%) |
ISCaa6 | IS5, ISL2 group | 1 | 991 | 15/19 | 0 | 36.6 (35.3 - 36.6) | 275 | 18 (86-100%) | 41 | 17 (88-100%) |
ISCaa7 | IS110 | 1 | 1483 | 0 | 0 | 31.9 | 343 | 3 (100%) | 4 | 3 (100%) |
ISCaa8 | IS5, IS1031 group | 2 (+1) | 893 | 18/22 | 0 | 39.5 | 264 | 6 (99-100%) | 6 | 6 (99-100%) |
ISCaa9 | IS5 | 3 (-1 ORFBC) | 881 | 18/21 | 0 | 38.8 | 253 | 15 (100%) | 3 | 15 (100%) |
ISCaa10 | IS200/IS605 IS200 group | 1 | 527 | 0 | 0 | 38.5 | 147 | 7 (99-100%) | 2 | 7 (99-100%) |
ISCaa11 | IS481 | 1 | 1031 | 10/11 | 6/3 | 38.9 (37.4 - 39.7) | 314 | 10 (83-100%) | 27 | 3 (87-100%) |
ISCaa12 | IS481 | 1 | 1210 | 29/34 | 6/2 | 37.6 | 364 | 3 (100%) | 3 | 3 (100%) |
ISCaa13 | IS5, IS427 group | 2 (+1) | 860 | 17/21 | 0 | 40.7 | 253 | 2 (99%) | 7 | 1 |
ISCaa14 | IS110 | 1 | 1256 | 0 | 0 | 38.1 | 326 | 2 (97%) | 0 | 1 |
ISCaa15 | IS1182 | 1 | 1434 | 18/18 | 4/2 | 35.9 | 457 | 3 (100%) | 3 | 3 (100%) |
ISCaa16 | IS6 | 1 | 837 | 15/18 | 0 | 37.4 (34.4 - 37.4) | 235 | 5 (82-100%) | 1 | 5 (85-100%) |