From: Differential strengths of selection on S-RNases from Physalis and Solanum(Solanaceae)
Model | ||
1) Global dN/dS rate (whole tree) | Â | Â |
Shared Parameters | lnL | AIC |
dNdS Clade A = dNdS Alla | -17167.25 | 34716.51 |
Global dN/dS = 0.90; CI = (0.87, 0.94) | Â | Â |
2) Separating Branch Versus Two Clades | Â | Â |
Shared Parameters | lnL | AIC |
dNdSdNdS Shared Clades A + Alla = 0.90; CI = (0.86, 0.94) | -17166.63 | 34717.27 |
Phys dNdS Branch A = 5.18; CI = (1.64, 10.49) | Â | Â |
LRT p-value vs the single rate model = 0.266 | Â | Â |
3) Clade A + Branch vs Alla | Â | Â |
Shared Parameters | lnL | AIC |
dNdS Branch A = Clade A = 2.19; CI = (2.03, 2.36) | -17118.27 | 34620.54* |
dNdS Clade S = 0.70; CI = (0.73, 0.77) | Â | Â |
LRT p-value vs the single rate model < 0.001 | Â | Â |
4) Clade A (subtree) vs Branch + Alla | Â | Â |
Shared Parameters | lnL | AIC |
Phys dNdS Clade A = 2.04; CI = (2.20, 2.37) | -17118.80 | 34621.60 |
Phys dNdS Branch A = dNdS; Clade Alla = 0.70; CI = (0.73, 0.77) | Â | |
LRT p-value vs the single rate model < 0.001 | Â | Â |
5) Clade A, Solanum , and Branch | Â | Â |
Shared Parameters | lnL | AIC |
Phys dNdS Clade A = 2.04; CI = (2.20, 2.37) | -17118.25 | 34622.51 |
dNdS Clade Alla 0.70; CI = (0.73, 0.77) | Â | Â |
Phys dNdS Branch A = 2.96; CI = (0.83, 6.17) | Â | Â |
LRT p-value vs the single rate model < 0.001 | Â | Â |