From: Genome-wide evidence for positive selection and recombination in Actinobacillus pleuropneumoniae
Name (Systematic) | Cluster ID a | COG b | Putative function of coding products | 2Δℓc | Q-value | p d | ω e | Positively selected sites f |
---|---|---|---|---|---|---|---|---|
napA | APO_0068 | C | Periplasmic nitrate reductase | 10.03 | 0.189 | 0.000 | 1.02 | Â |
glpA | APO_0197 | C | Anaerobic glycerol-3-phosphate dehydrogenase subunit A | 12.26 | 0.096 | 0.009 | 11.45 | Â |
fumC | APO_0306 | C | Fumarate hydratase | 15.63 | 0.032 | 0.004 | 99.56 | Â |
prlC | APO_0109 | E | Oligopeptidase A | 14.72 | 0.042 | 0.000 | 607.84 | Â |
argH | APO_0322 | E | Argininosuccinate lyase | 13.10 | 0.071 | 0.014 | 10.79 | 423 |
gntT | APO_0415 | E | Transporter, gluconate/H+ symporter (GntP) family | 11.74 | 0.106 | 0.008 | 13.97 | 190, 193 |
proA | APO_0424 | E | Gamma-glutamyl phosphate reductase | 10.02 | 0.189 | 0.051 | 3.29 | Â |
artP | APO_0998 | E | Arginine transport ATP-binding protein | 14.75 | 0.042 | 0.004 | 521.75 | 225 |
leuD | APO_1132 | E | 3-isopropylmalate dehydratase small subunit | 11.14 | 0.135 | 0.032 | 57.70 | Â |
cpdB | APO_0120 | F | 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 19.13 | 0.010 | 0.032 | 3.82 | 9, 99, 554 |
purD | APO_0394 | F | Phosphoribosylamine--glycine ligase | 13.44 | 0.062 | 0.061 | 34.74 | Â |
glgP | APO_00f74 | G | Maltodextrin phosphorylase | 14.13 | 0.054 | 0.019 | 9.66 | 13, 27, 392 |
kdgK | APO_0752 | G | 2-dehydro-3-deoxygluconokinase | 9.98 | 0.190 | 0.042 | 8.28 | Â |
hemN | APO_0325 | H | Oxygen-independent coproporphyrinogen-III oxidase | 21.87 | 0.005 | 0.015 | 27.37 | 38, 136, 428 |
lipB | APO_1067 | H | Octanoyltransferase | 10.14 | 0.189 | 0.000 | 1.00 | Â |
valS | APO_0044 | J | Valyl-tRNA synthetase | 22.18 | 0.005 | 0.016 | 3.82 | 47, 792 |
rumA | APO_0356 | J | 23S rRNA (uracil-5-)-methyltransferase | 26.17 | 0.002 | 0.003 | 47.26 | 20 |
trmA2 | APO_0540 | J | tRNA (uracil-5-)-methyltransferase | 10.70 | 0.160 | 0.028 | 4.08 | 24, 210 |
yhgF | APO_0081 | K | Transcriptional accessory protein | 18.60 | 0.010 | 0.024 | 3.78 | 10, 142 |
lysR | APO_0797 | K | Transcriptional regulatory protein | 18.79 | 0.010 | 0.012 | 10.60 | 284, 287, 292 |
parC | APO_0090 | L | DNA topoisomerase 4 subunit A | 13.47 | 0.062 | 0.003 | 10.50 | 357 |
mutM | APO_0873 | L | Heptosyltransferase family | 12.15 | 0.096 | 0.077 | 14.90 | 270 |
tatD | APO_0977 | L | Deoxyribonuclease | 13.73 | 0.059 | 0.198 | 2.42 | 188, 204, 234 |
hcsA | APO_0102 | M | Capsule polysaccharide modification protein | 10.07 | 0.189 | 0.027 | 3.16 | 483 |
hcsB | APO_0367 | M | Capsule polysaccharide modification protein | 18.72 | 0.010 | 0.034 | 18.52 | 13, 136, 366 |
ompP2B | APO_0561 | M | Outer membrane protein P2-like protein | 16.15 | 0.026 | 0.095 | 8.07 | 306, 317, 320 |
mscL | APO_1465 | M | Large-conductance mechanosensitive channel | 12.17 | 0.096 | 0.044 | 103.40 | 97 |
ptrA | APO_0039 | O | Protease III | 17.69 | 0.013 | 0.049 | 6.26 | 43, 44, 50, 91, 617, 909 |
glnD | APO_0064 | O | uridylyltransferase | 17.93 | 0.013 | 0.024 | 12.23 | 17, 190, 514, 551 |
sppA | APO_0149 | O | Protease 4 | 10.42 | 0.173 | 0.030 | 9.37 | Â |
lonH | APO_0207 | O | Lon protease | 15.24 | 0.035 | 0.013 | 106.47 | 19 |
nrfG | APO_0983 | O | Formate-dependent nitrite reductase complex subunit | 12.29 | 0.096 | 0.084 | 27.77 | Â |
tehA | APO_0711 | P | Tellurite resistance protein | 11.70 | 0.106 | 0.007 | 70.81 | 252 |
cysW | APO_0883 | P | Sulfate transport system permease protein | 13.80 | 0.059 | 0.074 | 3.68 | 145 |
- | APO_0030 | R | Helicase | 12.14 | 0.096 | 0.051 | 2.56 | Â |
pqiB | APO_0055 | R | Paraquat-inducible protein B | 20.31 | 0.008 | 0.046 | 3.62 | 259, 318, 384 |
tldD | APO_0268 | R | Protease | 10.16 | 0.189 | 0.009 | 15.91 | 377, 379 |
- | APO_0269 | R | Hypothetical protein | 10.02 | 0.189 | 0.000 | 1.00 | 463 |
pcaK | APO_0359 | R | Major facilitator transporter | 12.09 | 0.096 | 0.022 | 5.96 | 195, 238, 416, 417 |
thiH | APO_0509 | R | Thiazole biosynthesis protein | 18.32 | 0.011 | 0.012 | 12.98 | 15, 55 |
murQ | APO_0754 | R | N-acetylmuramic acid 6-phosphate etherase | 17.69 | 0.013 | 0.059 | 4.05 | 54, 99, 293 |
- | APO_0792 | R | Nucleoside-diphosphate sugar epimerase | 11.92 | 0.102 | 0.060 | 9.71 | Â |
rssA | APO_0839 | R | Patatin | 11.22 | 0.132 | 0.019 | 41.55 | 225 |
cof | APO_0888 | R | Hydrolases of the HAD superfamily | 10.62 | 0.160 | 0.000 | 25.15 | Â |
smtA | APO_0969 | R | Methyltransferase | 10.66 | 0.160 | 0.045 | 101.87 | 134, 204 |
aphA | APO_1107 | R | Membrane protein affecting hemolysin expression | 10.83 | 0.153 | 0.012 | 24.96 | 46 |
recX | APO_1397 | R | Regulatory protein | 19.96 | 0.008 | 0.008 | 37.09 | 47 |
ytfN | APO_0025 | S | Hypothetical protein | 14.07 | 0.054 | 0.002 | 239.60 | 553 |
- | APO_0098 | S | Oligopeptide transporter | 20.79 | 0.007 | 0.012 | 15.91 | 82, 127, 546 |
glnE | APO_0041 | T | Glutamate-ammonia-ligase adenylyltransferase | 11.88 | 0.102 | 0.023 | 3.60 | 53 |
typA | APO_0150 | T | GTP-binding protein | 33.59 | 0.000 | 0.006 | 15.43 | 395, 567, 569 |
apaA | APO_0772 | T | ABC transporter, periplasmic binding protein | 13.49 | 0.062 | 0.031 | 7.10 | 103, 147 |
- | APO_0051 | - | Hypothetical protein | 19.00 | 0.010 | 0.088 | 5.16 | 105 |
guaB | APO_0259 | - | Inosine-5'-monophosphate dehydrogenase | 15.25 | 0.035 | 0.013 | 4.98 | 448 |
- | APO_0393 | - | Hypothetical protein | 24.92 | 0.002 | 0.027 | 57.62 | 97, 104, 134, 355 |
- | APO_0571 | - | Hypothetical protein | 12.27 | 0.096 | 0.020 | 28.21 | 199, 275, 283 |
wecF | APO_0577 | - | TDP-Fuc4NAc:lipid II Fuc4NAc transferase | 22.68 | 0.005 | 0.035 | 14.23 | 70, 92, 182, 183, 289 |