Skip to main content

Table 3 Estimates of genetic diversity for the clades present within Lampropholis delicata.

From: Phylogeographic divergence in the widespread delicate skink (Lampropholis delicata) corresponds to dry habitat barriers in eastern Australia

Clade

n

h

Hd

M(S)

π

Tajima's D

Fs

RI

SSD

Clade 1

14

13

0.989

191(187)

0.026

0.378

0.585

0.020

0.033*

   1a

2

2

1.0

38(38)

0.016

NA

NA

NA

NA

   1b

3

3

1.0

7(7)

0.002

NA

NA

NA

NA

   1c

9

8

0.972

19(19)

0.003

-0.305

-2.005

0.063

0.054*

Clade 2

8

7

0.893

12(12)

0.001

-1.576*

-2.870*

0.050

0.010

Clade 3

19

15

0.965

170(164)

0.022

0.617

2.306

0.023

0.024

   3a

4

4

1.0

4(4)

0.001

-0.780

-1.872*

0.222

0.042

   3b

3

1

0.0

0(0)

0.000

NA

NA

NA

NA

   3c

10

8

0.933

54(53)

0.008

0.017

1.044

0.167

0.053

   3d

2

2

1.0

4(4)

0.002

NA

NA

NA

NA

Clade 4

48

43

0.996

213(206)

0.017

-0.498

-8.730*

0.002

0.009*

   4a

29

24

0.988

119(119)

0.009

-1.006

-3.512

0.005

0.010

   4b

14

14

1.0

30(30)

0.003

-1.472

-9.261*

0.015

0.006

   4c

5

5

1.0

47(47)

0.011

1.618

0.898

0.280

0.190*

Clade 5

18

13

0.948

87(87)

0.013

0.923

1.974

0.027

0.032

   5a

11

7

0.873

18(18)

0.002

-1.597

-0.929

0.113

0.036

   5b

7

6

0.952

35(35)

0.006

0.344

0.894

0.034

0.023

Clade 6

4

2

0.500

1(1)

< 0.001

-0.612

0.172

0.250

0.022

Clade 7

55

29

0.937

127(123)

0.005

-1.974*

-4.354

0.026

0.016

   7a

3

3

1.0

5(5)

0.001

NA

NA

NA

NA

   7b

52

26

0.930

68(68)

0.002

-2.306*

-11.161*

0.033

0.015

Clade 8

2

1

0.0

0(0)

0.000

NA

NA

NA

NA

Clade 9

70

42

0.943

205(201)

0.023

1.184

2.106

0.011

0.025

   9a

24

16

0.913

48(48)

0.005

-0.354

-1.561

0.021

0.022

   9b

1

1

NA

NA

NA

NA

NA

NA

NA

   9c

9

8

0.972

17(17)

0.003

-0.069

-2.070

0.036

0.020

   9d

36

17

0.821

24(24)

0.002

-0.851

-5.160*

0.055

0.038

Overall

238

165

0.990

715(625)

0.044

    
  1. n = sample size, h = number of haplotypes, Hd = haplotypic diversity, M = total number of mutations, S = number of segregating (polymorphic) sites, π = nucleotide diversity, Fs = Fu's F statistic, RI = raggedness index, SSD = sum of squared deviations. Asterisks indicate significant Tajima's D, Fu's F statistic, RI and SSD values.