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Table 3 Estimates of genetic diversity for the clades present within Lampropholis delicata.

From: Phylogeographic divergence in the widespread delicate skink (Lampropholis delicata) corresponds to dry habitat barriers in eastern Australia

Clade n h Hd M(S) π Tajima's D Fs RI SSD
Clade 1 14 13 0.989 191(187) 0.026 0.378 0.585 0.020 0.033*
   1a 2 2 1.0 38(38) 0.016 NA NA NA NA
   1b 3 3 1.0 7(7) 0.002 NA NA NA NA
   1c 9 8 0.972 19(19) 0.003 -0.305 -2.005 0.063 0.054*
Clade 2 8 7 0.893 12(12) 0.001 -1.576* -2.870* 0.050 0.010
Clade 3 19 15 0.965 170(164) 0.022 0.617 2.306 0.023 0.024
   3a 4 4 1.0 4(4) 0.001 -0.780 -1.872* 0.222 0.042
   3b 3 1 0.0 0(0) 0.000 NA NA NA NA
   3c 10 8 0.933 54(53) 0.008 0.017 1.044 0.167 0.053
   3d 2 2 1.0 4(4) 0.002 NA NA NA NA
Clade 4 48 43 0.996 213(206) 0.017 -0.498 -8.730* 0.002 0.009*
   4a 29 24 0.988 119(119) 0.009 -1.006 -3.512 0.005 0.010
   4b 14 14 1.0 30(30) 0.003 -1.472 -9.261* 0.015 0.006
   4c 5 5 1.0 47(47) 0.011 1.618 0.898 0.280 0.190*
Clade 5 18 13 0.948 87(87) 0.013 0.923 1.974 0.027 0.032
   5a 11 7 0.873 18(18) 0.002 -1.597 -0.929 0.113 0.036
   5b 7 6 0.952 35(35) 0.006 0.344 0.894 0.034 0.023
Clade 6 4 2 0.500 1(1) < 0.001 -0.612 0.172 0.250 0.022
Clade 7 55 29 0.937 127(123) 0.005 -1.974* -4.354 0.026 0.016
   7a 3 3 1.0 5(5) 0.001 NA NA NA NA
   7b 52 26 0.930 68(68) 0.002 -2.306* -11.161* 0.033 0.015
Clade 8 2 1 0.0 0(0) 0.000 NA NA NA NA
Clade 9 70 42 0.943 205(201) 0.023 1.184 2.106 0.011 0.025
   9a 24 16 0.913 48(48) 0.005 -0.354 -1.561 0.021 0.022
   9b 1 1 NA NA NA NA NA NA NA
   9c 9 8 0.972 17(17) 0.003 -0.069 -2.070 0.036 0.020
   9d 36 17 0.821 24(24) 0.002 -0.851 -5.160* 0.055 0.038
Overall 238 165 0.990 715(625) 0.044     
  1. n = sample size, h = number of haplotypes, Hd = haplotypic diversity, M = total number of mutations, S = number of segregating (polymorphic) sites, π = nucleotide diversity, Fs = Fu's F statistic, RI = raggedness index, SSD = sum of squared deviations. Asterisks indicate significant Tajima's D, Fu's F statistic, RI and SSD values.