SNP | Gene | Chra | A1b | Annotation | Diseasesc | Ref |
---|---|---|---|---|---|---|
 |  |  |  |  | RA-AS- |  |
rs11752919 | ZSCAN23 | 6 | C | in small intron | Â | [3] |
 |  |  |  |  | T1D/ATD-MS |  |
 |  |  |  | Asp527Asn (in CDSN); less than 2.6 | RA-AS- |  |
rs3130981 | CDSN/PSORS1C1 | 6 | A | Â | Â | [3] |
 |  |  |  | kb from rs1265048 | T1D/ATD-MS |  |
 |  |  |  | intergenic; 1.2kb upstream of | RA-AS- |  |
rs1265048 | Â | 6 | C | Â | Â | [3] |
 |  |  |  | PSORS1C1 | T1D/ATD-MS |  |
 |  |  |  |  | RA-AS- |  |
rs151719 | HLA-DMB | 6 | G | in small intron | Â | [3] |
 |  |  |  |  | T1D/ATD-MS |  |
 |  |  |  |  | ATD-MS/RA- |  |
rs10484565 | TAP2 | 6 | T | in 3' UTR | Â | [3] |
 |  |  |  |  | AS-T1D |  |
 |  |  |  |  | RA-AS- |  |
0rs1264303 | VARS2 | 6 | G | in 5'UTR | Â | [3] |
 |  |  |  |  | T1D/ATD-MS |  |
 |  |  |  |  | RA-AS- |  |
rs2076530 | BTNL2 | 6 | G | splice site altering/protein truncation | Â | [3] |
 |  |  |  |  | T1D/ATD-MS |  |
 |  |  |  | intergenic; 0.7 kb downstream | RA-AS-MS/T1D- |  |
rs3129953 | Â | 6 | T | Â | Â | [3] |
 |  |  |  | BTNL2 | ATD |  |
 |  |  |  |  | RA-AS- |  |
rs757262 | TRIM40 | 6 | T | Thr183Met | Â | [3] |
 |  |  |  |  | T1D/ATD-MS |  |
 |  |  |  | intronic; close to alternatively spliced | RA-AS-T1D- |  |
rs2517646 | TRIM10 | 6 | G | Â | Â | [3] |
 |  |  |  | exon | ATD/MS |  |
 |  |  |  |  | RA-AS- |  |
rs2071286 | NOTCH4 | 6 | A | intronic | Â | [3] |
 |  |  |  |  | T1D/ATD-MS |  |
 |  |  |  |  | CD/T1D-RA- |  |
rs2476601 | PTPN22 | 1 | T | Arg620TRP | Â | |
 |  |  |  |  | SLE-GD |  |
 |  |  |  | about 1kb downstream the |  |  |
rs3024505 | IL10 | 1 | A | Â | T1D/CD-UC | [4] |
 |  |  |  | transcription end site |  |  |
 |  |  |  | about 1kb downstream the |  |  |
rs917997 | IL18RAP | 2 | T | Â | T1D/CD | [4] |
 |  |  |  | transcription end site |  |  |
rs9388489 | Â | 6 | G | intergenic | CD/T1D | [4] |
rs4788084 | Â | 16 | T | intergenic | T1D/CD | [4] |
 |  |  |  |  | T1D-ATD- |  |
rs1063635 | MICA | 6 | A | Gln274Arg | Â | [3] |
 |  |  |  |  | MS/AS |  |
rs1634717 | Â | 6 | A | intergenic | RA/T1D-ATD- | [3] |
 |  |  |  |  | MS |  |
 |  |  |  |  | RA-AS-MS/T1D- |  |
rs204991 | GPSM3 | 6 | C | intronic | Â | [3] |
 |  |  |  |  | ATD |  |
rs2242655 | C6orf47 | 6 | C | Lys92Asn | ATD-MS/RA- | [3] |
 |  |  |  |  | AS-T1D |  |
 |  |  |  |  | ATD-MS/RA- |  |
rs2299851 | MSH5 | 6 | T | Intronic | Â | [3] |
 |  |  |  |  | AS-T1D |  |
 |  |  |  |  | AS/RA-T1D- |  |
rs2248462 | Â | 6 | A | intergenic | Â | [3] |
 |  |  |  |  | ATD-MS |  |
 |  |  |  | intronic; close to alternatively spliced | RA-AS- |  |
rs2844463 | BAT3 | 6 | T | Â | Â | [3] |
 |  |  |  | exon | ATD/T1D-MS |  |
 |  |  |  |  | RA-AS-MS/T1D- |  |
rs3135363 | Â | 6 | C | intergenic | Â | [3] |
 |  |  |  |  | ATD |  |
 |  |  |  |  | RA-AS-MS/T1D- |  |
rs4428528 | Â | 6 | C | intergenic | Â | [3] |
 |  |  |  |  | ATD |  |
 |  |  |  |  | MS/RA-AS-T1D- |  |
rs887464 | Â | 6 | A | intergenic (upstream PSORS1C3) | Â | [3] |
 |  |  |  |  | ATD |  |
 |  |  |  |  | ATD-MS/RA- |  |
rs9267954 | Â | 6 | T | intergenic | Â | [3] |
 |  |  |  |  | AS-T1D |  |
rs2201841 | IL23R | 1 | G | intronic | UC/psoriasis | |
rs744166 | STAT3 | 17 | G | intronic | CD/MS |