Skip to main content

Table 10 Frequencies of SNPs by function and chromosome.

From: Shifting patterns of natural variation in the nuclear genome of caenorhabditis elegans

 

I

 

II

 

III

 

IV

 

V

 

X

 
 

4856

4858

4856

4858

4856

4858

4856

4858

4856

4858

4856

4858

Function

            

Exon

            

Insert

9,942

91

16,423

334

10,263

156

11,219

6

8,645

112

11,106

437.11

   Deletion

13825.97

78.05

17536.07

320.82

13684.02

192.04

15121.4

5.6

13436

93.73

11907.1

309.85

   bs

19107.81

4110.87

41335.02

21232.1

19126.52

11330.5

12926.4

173.73

45618

1944.89

11563.6

6003.35

   syn

9165.53

2406.68

19484.52

10292

7775.01

6870.87

5243.72

106.48

23642

876.37

5839.05

3192.57

   Total

42876.05

4279.99

75293.76

21886.6

43073.55

11679.1

39267

184.94

67698

2151.1

34576.3

6750.32

Intron

            

   Insert

26409.16

435.8

20319.57

782.81

8397.01

867.75

13536.1

16.81

19268

201.52

14540.4

459.24

   Deletion

11806.45

305.71

22268.03

648.06

26590.53

654.37

23657.7

16.81

11769

126.54

15570.8

520.11

   bs

19263.15

5281.69

31731.94

14167.6

14306.02

10605

16828.7

173.73

36974

2371.36

14998.3

6877.58

   Total

57478.76

6023.21

74319.54

15598.4

49293.56

12127.2

54022.6

207.36

68011

2699.41

45109.5

7856.92

UTR

            

   Insert

11495.75

695.99

21850.5

1803.03

11507.01

1322.96

8536.29

44.83

19789

243.7

7785.4

586.5

   Deletion

24,079

852

17,675

1,655

23,325

1,046

15,487

22

16,456

248

18,662

580.97

   bs

23457.55

6036.22

25747.41

18421.7

15239.02

11842.7

13658.1

263.4

31558

3791.37

10876.7

7137.63

   Total

59032.24

7584.3

65273.15

21880.2

50071.06

14211.2

37681.6

330.65

67802

4283.45

37324.1

8305.1

IG

            

   Insert

23923.59

1144.8

28670.08

3054.24

11351.51

1856.42

27194.2

140.11

38432

328.05

34805.3

1593.52

   Deletion

59032.24

787.05

44814.4

2771.91

23791.53

1593.25

58290.7

117.69

53950

313.99

49689.2

1659.91

   bs

34021.21

9997.48

54556.66

39538.3

32966.04

20420.6

41827.8

1333.8

84675

5740.94

43277.7

22901.3

   Total

116977.1

11929.33

128041.2

45364.4

68109.09

23870.2

127313

1591.6

177057

6382.99

127772

26154.7

  1. The numbers represent isolate × 10-8 SNPs per base. *
  2. *For ease in comparison of frequencies across categories and strains, we divided the number of polymorphisms by the number of analyzed sites and multiplied that number by 108. For example, the proportion of insertion polymorphisms in CB4856 is 9942*10-8.