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Table 10 Frequencies of SNPs by function and chromosome.

From: Shifting patterns of natural variation in the nuclear genome of caenorhabditis elegans

  I   II   III   IV   V   X  
  4856 4858 4856 4858 4856 4858 4856 4858 4856 4858 4856 4858
Function             
Exon             
Insert 9,942 91 16,423 334 10,263 156 11,219 6 8,645 112 11,106 437.11
   Deletion 13825.97 78.05 17536.07 320.82 13684.02 192.04 15121.4 5.6 13436 93.73 11907.1 309.85
   bs 19107.81 4110.87 41335.02 21232.1 19126.52 11330.5 12926.4 173.73 45618 1944.89 11563.6 6003.35
   syn 9165.53 2406.68 19484.52 10292 7775.01 6870.87 5243.72 106.48 23642 876.37 5839.05 3192.57
   Total 42876.05 4279.99 75293.76 21886.6 43073.55 11679.1 39267 184.94 67698 2151.1 34576.3 6750.32
Intron             
   Insert 26409.16 435.8 20319.57 782.81 8397.01 867.75 13536.1 16.81 19268 201.52 14540.4 459.24
   Deletion 11806.45 305.71 22268.03 648.06 26590.53 654.37 23657.7 16.81 11769 126.54 15570.8 520.11
   bs 19263.15 5281.69 31731.94 14167.6 14306.02 10605 16828.7 173.73 36974 2371.36 14998.3 6877.58
   Total 57478.76 6023.21 74319.54 15598.4 49293.56 12127.2 54022.6 207.36 68011 2699.41 45109.5 7856.92
UTR             
   Insert 11495.75 695.99 21850.5 1803.03 11507.01 1322.96 8536.29 44.83 19789 243.7 7785.4 586.5
   Deletion 24,079 852 17,675 1,655 23,325 1,046 15,487 22 16,456 248 18,662 580.97
   bs 23457.55 6036.22 25747.41 18421.7 15239.02 11842.7 13658.1 263.4 31558 3791.37 10876.7 7137.63
   Total 59032.24 7584.3 65273.15 21880.2 50071.06 14211.2 37681.6 330.65 67802 4283.45 37324.1 8305.1
IG             
   Insert 23923.59 1144.8 28670.08 3054.24 11351.51 1856.42 27194.2 140.11 38432 328.05 34805.3 1593.52
   Deletion 59032.24 787.05 44814.4 2771.91 23791.53 1593.25 58290.7 117.69 53950 313.99 49689.2 1659.91
   bs 34021.21 9997.48 54556.66 39538.3 32966.04 20420.6 41827.8 1333.8 84675 5740.94 43277.7 22901.3
   Total 116977.1 11929.33 128041.2 45364.4 68109.09 23870.2 127313 1591.6 177057 6382.99 127772 26154.7
  1. The numbers represent isolate × 10-8 SNPs per base. *
  2. *For ease in comparison of frequencies across categories and strains, we divided the number of polymorphisms by the number of analyzed sites and multiplied that number by 108. For example, the proportion of insertion polymorphisms in CB4856 is 9942*10-8.
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