TY - JOUR AU - Soltis, D. E. AU - Morris, A. B. AU - McLachlan, J. S. AU - Manos, P. S. AU - Soltis, P. S. PY - 2006 DA - 2006// TI - Comparative phylogeography of unglaciated eastern North America JO - Mol Ecol VL - 15 UR - https://doi.org/10.1111/j.1365-294X.2006.03061.x DO - 10.1111/j.1365-294X.2006.03061.x ID - Soltis2006 ER - TY - JOUR AU - Riddle, B. R. AU - Hafner, D. J. AU - Alexander, L. F. PY - 2000 DA - 2000// TI - Phylogeography and systematics of the Peromyscus eremicus species group and the historical biogeography of North American warm regional deserts JO - Mol Phyl Evol VL - 17 UR - https://doi.org/10.1006/mpev.2000.0841 DO - 10.1006/mpev.2000.0841 ID - Riddle2000 ER - TY - JOUR AU - Zink, R. M. AU - Kessen, A. E. AU - Line, T. V. AU - Blackwell-Rago, R. C. PY - 2001 DA - 2001// TI - Comparative phylogeography of some aridland bird species JO - The Condor VL - 103 UR - https://doi.org/10.1650/0010-5422(2001)103[0001:CPOSAB]2.0.CO;2 DO - 10.1650/0010-5422(2001)103[0001:CPOSAB]2.0.CO;2 ID - Zink2001 ER - TY - JOUR AU - Swenson, N. G. AU - Howard, D. J. PY - 2005 DA - 2005// TI - Clustering of contact zones, hybrid zones, and phylogeographic breaks in North America JO - Am Nat VL - 166 UR - https://doi.org/10.1086/491688 DO - 10.1086/491688 ID - Swenson2005 ER - TY - JOUR AU - Klicka, J. AU - Zink, R. M. PY - 1997 DA - 1997// TI - The importance of recent ice ages in speciation: a failed paradigm JO - Science VL - 277 UR - https://doi.org/10.1126/science.277.5332.1666 DO - 10.1126/science.277.5332.1666 ID - Klicka1997 ER - TY - JOUR AU - Hewitt, G. PY - 2000 DA - 2000// TI - The genetic legacy of the Quaternary ice ages JO - Nature VL - 405 UR - https://doi.org/10.1038/35016000 DO - 10.1038/35016000 ID - Hewitt2000 ER - TY - JOUR AU - Hewitt, G. M. PY - 1996 DA - 1996// TI - Some genetic consequences of ice ages, and their role, in divergence and speciation JO - Biol J Linn Soc VL - 58 UR - https://doi.org/10.1111/j.1095-8312.1996.tb01434.x DO - 10.1111/j.1095-8312.1996.tb01434.x ID - Hewitt1996 ER - TY - JOUR AU - Slatkin, M. PY - 1993 DA - 1993// TI - Isolation by distance in equilibrium and non-equilibrium populations JO - Evolution VL - 47 UR - https://doi.org/10.2307/2410134 DO - 10.2307/2410134 ID - Slatkin1993 ER - TY - JOUR AU - Burridge, C. P. AU - Craw, D. AU - Jack, D. C. AU - King, T. M. AU - Waters, J. M. PY - 2008 DA - 2008// TI - Does fish ecology predict dispersal across a river drainage divide? JO - Evolution VL - 62 UR - https://doi.org/10.1111/j.1558-5646.2008.00377.x DO - 10.1111/j.1558-5646.2008.00377.x ID - Burridge2008 ER - TY - JOUR AU - Burney, C. W. AU - Brumfield, R. T. PY - 2009 DA - 2009// TI - Ecology predicts levels of genetic differentiation in Neotropical birds JO - Am Nat VL - 174 UR - https://doi.org/10.1086/603613 DO - 10.1086/603613 ID - Burney2009 ER - TY - CHAP AU - Halkin, S. L. AU - Linville, S. U. ED - Poole, A. ED - Gill, F. PY - 1999 DA - 1999// BT - Northern Cardinal (Cardinalis cardinalis) The Birds of North America No 44 PB - The Birds of North America Inc CY - Philadelphia ID - Halkin1999 ER - TY - JOUR AU - Lartillot, N. AU - Philippe, H. PY - 2006 DA - 2006// TI - Computing Bayes factors using thermodynamic integration JO - Syst Biol VL - 55 UR - https://doi.org/10.1080/10635150500433722 DO - 10.1080/10635150500433722 ID - Lartillot2006 ER - TY - CHAP AU - Wolpert, R. L. AU - Schmidler, S. C. PY - 2010 DA - 2010// BT - α-Stable limit laws for harmonic mean estimators of marginal likelihoods ID - Wolpert2010 ER - TY - JOUR AU - Xie, W. AU - Lewis, P. O. AU - Fan, Y. AU - Kuo, L. AU - Chen, M. H. PY - 2011 DA - 2011// TI - Improving marginal likelihood estimation for Bayesian phylogenetic model selection JO - Syst Biol VL - 60 UR - https://doi.org/10.1093/sysbio/syq085 DO - 10.1093/sysbio/syq085 ID - Xie2011 ER - TY - JOUR AU - Liu, L. AU - Pearl, D. PY - 2007 DA - 2007// TI - Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions JO - Syst Biol VL - 56 UR - https://doi.org/10.1080/10635150701429982 DO - 10.1080/10635150701429982 ID - Liu2007 ER - TY - JOUR AU - Houston, D. AU - Shiozawa, D. K. AU - Riddle, B. R. PY - 2010 DA - 2010// TI - Phylogenetic relationships of the western North American cyprinid genus Richardsonius, with an overview of phylogeographic structure JO - Mol Phyl Evol VL - 55 UR - https://doi.org/10.1016/j.ympev.2009.10.017 DO - 10.1016/j.ympev.2009.10.017 ID - Houston2010 ER - TY - JOUR AU - Spellman, G. M. AU - Klicka, J. PY - 2006 DA - 2006// TI - Testing hypotheses of Pleistocene population history using coalescent simulations: phylogeography of the pygmy nuthatch (Sitta pygmaea) JO - Proc Roy Soc B Biol VL - 273 UR - https://doi.org/10.1098/rspb.2006.3682 DO - 10.1098/rspb.2006.3682 ID - Spellman2006 ER - TY - JOUR AU - Arbeláez-Cortés, E. AU - Nyári, Á. S. AU - Navarro-Sigüenza, A. G. PY - 2010 DA - 2010// TI - The differential effect of lowlands on the phylogeographic pattern of a Mesoamerican montane species (Lepidocolaptes affinis, Aves: Furnariidae) JO - Mol Phyl Evol VL - 57 UR - https://doi.org/10.1016/j.ympev.2010.06.013 DO - 10.1016/j.ympev.2010.06.013 ID - Arbeláez-Cortés2010 ER - TY - JOUR AU - Riddle, B. R. AU - Hafner, D. J. AU - Alexander, L. F. AU - Jaeger, J. R. PY - 2000 DA - 2000// TI - Cryptic vicariance in the historical assembly of a Baja California peninsular desert biota JO - Proc Natl Acad Sci USA VL - 97 UR - https://doi.org/10.1073/pnas.250413397 DO - 10.1073/pnas.250413397 ID - Riddle2000 ER - TY - JOUR AU - Ridgway, R. PY - 1901 DA - 1901// TI - The birds of Middle and North America: a descriptive catalogue of the higher groups, genera, species, subspecies of birds known to occur in North America JO - U S Nat Mus Bull VL - 1 ID - Ridgway1901 ER - TY - JOUR AU - Rojas-Soto, O. R. AU - Westberg, M. AU - Navarro-Sigüenza, A. G. AU - Zink, R. M. PY - 2010 DA - 2010// TI - Genetic and ecological differentiation in the endemic avifauna of Tiburón Island JO - J Avian Biol VL - 41 UR - https://doi.org/10.1111/j.1600-048X.2010.04864.x DO - 10.1111/j.1600-048X.2010.04864.x ID - Rojas-Soto2010 ER - TY - JOUR AU - Clark, P. U. AU - Mix, A. C. PY - 2002 DA - 2002// TI - Ice sheets and sea level of the Last Glacial Maximum JO - Quat Sci Rev VL - 21 UR - https://doi.org/10.1016/S0277-3791(01)00118-4 DO - 10.1016/S0277-3791(01)00118-4 ID - Clark2002 ER - TY - JOUR AU - Zink, R. M. PY - 1996 DA - 1996// TI - Comparative phylogeography in North American birds JO - Evolution VL - 50 UR - https://doi.org/10.2307/2410802 DO - 10.2307/2410802 ID - Zink1996 ER - TY - JOUR AU - Vázquez-Domínguez, E. AU - Arita, H. T. PY - 2010 DA - 2010// TI - The Yucatan peninsula: biogeographical history 65 million years in the making JO - Ecography VL - 33 ID - Vázquez-Domínguez2010 ER - TY - CHAP AU - Parkes, K. C. PY - 1997 DA - 1997// TI - The Northern Cardinals of the Caribbean slope of México, with the description of an additional subspecies from Yucatan BT - The era of Alan R Phillips: A festschrift PB - Dickerman RW Horizon Communications, Albuquegue CY - Compiler ID - Parkes1997 ER - TY - JOUR AU - Omland, K. E. AU - Baker, J. M. AU - Peters, J. L. PY - 2006 DA - 2006// TI - Genetic signatures of intermediate divergence: population history of Old and New World Holarctic ravens (Corvus corax) JO - Mol Ecol VL - 15 UR - https://doi.org/10.1111/j.1365-294X.2005.02827.x DO - 10.1111/j.1365-294X.2005.02827.x ID - Omland2006 ER - TY - JOUR AU - Spaw, R. H. PY - 2006 DA - 2006// TI - Late Pleistocene carbonate bank deposition; Cozumel Island, Quintana Roo, Mexico JO - Gulf Coast Assoc Geol Soc Trans VL - 28 ID - Spaw2006 ER - TY - JOUR AU - McCloy, C. AU - Ingle, J. C. AU - Barron, J. A. PY - 1988 DA - 1988// TI - Neogene stratigraphy, foraminifera,diatoms, and depostional history of Maria Madre Island, Mexico: Evidence of Early Neogene marine conditions in the southern Gulf of California JO - Marine Micropaleontology VL - 13 UR - https://doi.org/10.1016/0377-8398(88)90003-5 DO - 10.1016/0377-8398(88)90003-5 ID - McCloy1988 ER - TY - JOUR AU - Stager, K. E. PY - 1957 DA - 1957// TI - The avifauna of the Tres Marías Islands, México JO - The Auk VL - 74 UR - https://doi.org/10.2307/4081741 DO - 10.2307/4081741 ID - Stager1957 ER - TY - JOUR AU - Woolfit, M. AU - Bromham, L. PY - 2005 DA - 2005// TI - Population size and the rate of molecular evolution on islands JO - Proc Roy Soc Lond B VL - 272 UR - https://doi.org/10.1098/rspb.2005.3217 DO - 10.1098/rspb.2005.3217 ID - Woolfit2005 ER - TY - JOUR AU - Ho, S. Y. W. AU - Phillips, M. J. AU - Cooper, A. AU - Drummond, A. J. PY - 2005 DA - 2005// TI - Time dependency of molecular rate estimates and systematic overestimation of recent divergence times JO - Mol Biol Evol VL - 22 UR - https://doi.org/10.1093/molbev/msi145 DO - 10.1093/molbev/msi145 ID - Ho2005 ER - TY - JOUR AU - Peterson, G. I. AU - Masel, J. PY - 2009 DA - 2009// TI - Quantitative prediction of molecular clock and Ka/Ksat short timescales JO - Mol Biol Evol VL - 26 UR - https://doi.org/10.1093/molbev/msp175 DO - 10.1093/molbev/msp175 ID - Peterson2009 ER - TY - JOUR AU - Zink, R. M. AU - Barrowclough, G. F. PY - 2008 DA - 2008// TI - Mitochondrial DNA under siege in avian phylogeography JO - Mol Ecol VL - 17 UR - https://doi.org/10.1111/j.1365-294X.2008.03737.x DO - 10.1111/j.1365-294X.2008.03737.x ID - Zink2008 ER - TY - JOUR AU - Maddison, W. P. PY - 1997 DA - 1997// TI - Gene trees in species trees JO - Syst Biol VL - 46 UR - https://doi.org/10.1093/sysbio/46.3.523 DO - 10.1093/sysbio/46.3.523 ID - Maddison1997 ER - TY - JOUR AU - Arbogast, B. S. AU - Edwards, S. V. AU - Wakeley, J. AU - Beerli, P. AU - Slowinski, J. B. PY - 2002 DA - 2002// TI - Estimating divergence times from molecular data on phylogenetic and population genetic timescales JO - Annu Rev Ecol Syst VL - 33 UR - https://doi.org/10.1146/annurev.ecolsys.33.010802.150500 DO - 10.1146/annurev.ecolsys.33.010802.150500 ID - Arbogast2002 ER - TY - JOUR AU - Cheviron, Z. A. AU - Brumfield, R. T. PY - 2009 DA - 2009// TI - Migration-selection balance and local adaptation of mitochondrial haplotypes in Rufous-collared Sparrows (Zonotrichia capensis) along an elevational gradient JO - Evolution VL - 63 UR - https://doi.org/10.1111/j.1558-5646.2009.00644.x DO - 10.1111/j.1558-5646.2009.00644.x ID - Cheviron2009 ER - TY - JOUR AU - Leaché, A. D. AU - Fujita, M. K. PY - 2010 DA - 2010// TI - Bayesian species delimitation in west African forest geckos (Hemidactylus fasciatus) JO - Proc Roy Soc B Biol VL - 277 UR - https://doi.org/10.1098/rspb.2010.0662 DO - 10.1098/rspb.2010.0662 ID - Leaché2010 ER - TY - CHAP AU - Avise, J. C. PY - 2000 DA - 2000// BT - Phylogeography: The History and Formation of Species PB - Harvard University Press CY - Cambridge ID - Avise2000 ER - TY - JOUR AU - Frankham, R. PY - 1996 DA - 1996// TI - Relationships of genetic variation to population size in wildlife JO - Cons Biol VL - 10 UR - https://doi.org/10.1046/j.1523-1739.1996.10061500.x DO - 10.1046/j.1523-1739.1996.10061500.x ID - Frankham1996 ER - TY - JOUR AU - Berlin, S. AU - Tomaras, D. AU - Charlesworth, B. PY - 2007 DA - 2007// TI - Low mitochondrial variability in birds may indicate Hill-Robertson effects on the W chromosome JO - Heredity VL - 99 UR - https://doi.org/10.1038/sj.hdy.6801014 DO - 10.1038/sj.hdy.6801014 ID - Berlin2007 ER - TY - JOUR AU - Bazin, E. AU - Glémin, S. AU - Galtier, N. PY - 2006 DA - 2006// TI - Population size does not influence mitochondrial genetic diversity in animals JO - Science VL - 312 UR - https://doi.org/10.1126/science.1122033 DO - 10.1126/science.1122033 ID - Bazin2006 ER - TY - JOUR AU - Fry, A. J. AU - Zink, R. M. PY - 1998 DA - 1998// TI - Geographic Analysis of Nucleotide Diversity and Song Sparrow Population History JO - Mol Ecol VL - 7 UR - https://doi.org/10.1046/j.1365-294x.1998.00462.x DO - 10.1046/j.1365-294x.1998.00462.x ID - Fry1998 ER - TY - JOUR AU - Milá, B. AU - Smith, T. B. AU - Wayne, R. K. PY - 2007 DA - 2007// TI - Speciation and rapid phenotypic differentiation in the yellow-rumped warbler (Dendroica coronata) complex JO - Mol Ecol VL - 16 UR - https://doi.org/10.1111/j.1365-294X.2006.03119.x DO - 10.1111/j.1365-294X.2006.03119.x ID - Milá2007 ER - TY - JOUR AU - Milá, B. AU - Girman, D. J. AU - Kimura, M. AU - Smith, T. B. PY - 2000 DA - 2000// TI - Genetic evidence for the effect of a post-glacial population expansion on the phylogeography of a North American songbird JO - Proc Roy Soc B Biol VL - 267 UR - https://doi.org/10.1098/rspb.2000.1107 DO - 10.1098/rspb.2000.1107 ID - Milá2000 ER - TY - JOUR AU - Smith, B. T. AU - Klicka, J. PY - 2010 DA - 2010// TI - The profound influence of the Late Pliocene Panamanian uplift on the exchange, diversification, and distribution of New World birds JO - Ecography VL - 33 UR - https://doi.org/10.1111/j.1600-0587.2009.06105.x DO - 10.1111/j.1600-0587.2009.06105.x ID - Smith2010 ER - TY - JOUR AU - Dow, D. D. AU - Scott, D. M. PY - 1971 DA - 1971// TI - Dispersal and range expansion by the cardinal: an analysis of banding records JO - Can J Zool VL - 49 UR - https://doi.org/10.1139/z71-028 DO - 10.1139/z71-028 ID - Dow1971 ER - TY - JOUR AU - Paradis, E. AU - Baillie, S. R. AU - Sutherland, W. J. AU - Gregory, R. D. PY - 2002 DA - 2002// TI - Patterns of natal and breeding dispersal in birds JO - J Animal Ecol VL - 67 UR - https://doi.org/10.1046/j.1365-2656.1998.00215.x DO - 10.1046/j.1365-2656.1998.00215.x ID - Paradis2002 ER - TY - JOUR AU - Moore, W. S. AU - Dolbeer, R. A. PY - 1989 DA - 1989// TI - The use of banding recovery data to estimate dispersal rates and gene flow in avian species: case studies in red-winged blackbird and common grackle JO - The Condor VL - 91 UR - https://doi.org/10.2307/1368301 DO - 10.2307/1368301 ID - Moore1989 ER - TY - JOUR AU - Klicka, J. AU - Burns, K. AU - Spellman, G. M. PY - 2007 DA - 2007// TI - Defining a monophyletic Cardinalini: A molecular perspective JO - Mol Phyl Evol VL - 45 UR - https://doi.org/10.1016/j.ympev.2007.07.006 DO - 10.1016/j.ympev.2007.07.006 ID - Klicka2007 ER - TY - JOUR AU - Hackett, S. J. PY - 1996 DA - 1996// TI - Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves) JO - Mol Phyl Evol VL - 5 UR - https://doi.org/10.1006/mpev.1996.0032 DO - 10.1006/mpev.1996.0032 ID - Hackett1996 ER - TY - BOOK AU - Nylander, J. PY - 2004 DA - 2004// TI - MrModeltest v 2.3 ID - Nylander2004 ER - TY - JOUR AU - Ronquist, F. AU - Huelsenbeck, J. P. PY - 2003 DA - 2003// TI - MRBAYES 3: Bayesian phylogenetic inference under mixed models JO - Bioinfor VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg180 DO - 10.1093/bioinformatics/btg180 ID - Ronquist2003 ER - TY - JOUR AU - Brown, J. M. AU - Hedtke, S. M. AU - Lemmon, A. R. AU - Lemmon, E. M. PY - 2010 DA - 2010// TI - When trees grow too long: investigating the causes of highly inaccurate Bayesian branch length estimates JO - Syst Biol VL - 59 UR - https://doi.org/10.1093/sysbio/syp081 DO - 10.1093/sysbio/syp081 ID - Brown2010 ER - TY - CHAP AU - Rambaut, A. AU - Drummond, A. J. PY - 2010 DA - 2010// BT - Tracer v 1.5 ID - Rambaut2010 ER - TY - JOUR AU - Drummond, A. J. AU - Rambaut, A. PY - 2007 DA - 2007// TI - BEAST: Bayesian evolutionary analysis by sampling trees JO - BMC Evol Biol VL - 7 UR - https://doi.org/10.1186/1471-2148-7-214 DO - 10.1186/1471-2148-7-214 ID - Drummond2007 ER - TY - JOUR AU - Lovette, I. J. PY - 2004 DA - 2004// TI - Mitochondrial dating and mixed support for the "2% rule" in birds JO - Auk VL - 121 ID - Lovette2004 ER - TY - JOUR AU - Tamura, K. AU - Dudley, J. AU - Nei, M. AU - Kumar, S. PY - 2007 DA - 2007// TI - MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm092 DO - 10.1093/molbev/msm092 ID - Tamura2007 ER - TY - JOUR AU - Excoffier, L. G. L. AU - Schneider, S. PY - 2005 DA - 2005// TI - Arlequin ver. 3.0: An integrated software package for population genetics data analysis JO - Evol Bioinfor Onl VL - 1 ID - Excoffier2005 ER - TY - BOOK AU - Nei, M. PY - 1987 DA - 1987// TI - Molecular Evolutionary Genetics PB - Columbia Univ Press CY - New York ID - Nei1987 ER - TY - JOUR AU - Librado, P. AU - Rozas, J. PY - 2009 DA - 2009// TI - DnaSP v5: A software for comprehensive analysis of DNA polymorphism data JO - Bioinfor VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp187 DO - 10.1093/bioinformatics/btp187 ID - Librado2009 ER - TY - JOUR AU - Suchard, M. A. AU - Weiss, R. E. AU - Sinsheimer, J. S. PY - 2001 DA - 2001// TI - Bayesian selection of continuous-time Markov chain evolutionary models JO - Mol Biol Evol VL - 18 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003872 DO - 10.1093/oxfordjournals.molbev.a003872 ID - Suchard2001 ER - TY - BOOK AU - Monson, G. AU - Phillips, A. R. PY - 1981 DA - 1981// TI - Annotated checklist of birds of Arizona PB - Univ of Arizona Press CY - Tucson ID - Monson1981 ER - TY - JOUR AU - Hijmans, R. J. AU - Cameron, S. E. AU - Parra, J. L. AU - Jones, P. G. AU - Jarvis, A. PY - 2005 DA - 2005// TI - Very high resolution interpolated climate surfaces for global land areas JO - Int J Clim VL - 25 UR - https://doi.org/10.1002/joc.1276 DO - 10.1002/joc.1276 ID - Hijmans2005 ER - TY - JOUR AU - Phillips, S. J. AU - Anderson, R. P. AU - Schapire, R. E. PY - 2006 DA - 2006// TI - Maximum entropy modeling of species geographic distributions JO - Ecol Mod VL - 190 UR - https://doi.org/10.1016/j.ecolmodel.2005.03.026 DO - 10.1016/j.ecolmodel.2005.03.026 ID - Phillips2006 ER - TY - CHAP AU - Ridgely, R. S. AU - Allnutt, T. F. AU - Brooks, T. AU - McNicol, D. K. AU - Mehlman, D. W. AU - Young, B. E. AU - Zook, J. R. PY - 2007 DA - 2007// TI - Digital Distribution Maps of the Birds of the Western Hemisphere, version 3.0 BT - NatureServe, Arlington ID - Ridgely2007 ER - TY - STD TI - Sauer JR, Hines JE, Fallon J: The North American Breeding Bird Survey, Results and Analysis 1966-2007. Version 5.15. USGS Patuxent Wildlife Research Center, Laurel, MD ID - ref66 ER -