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Table 2 Divergence process table of domain evolution from EamA

From: Functional specialization in nucleotide sugar transporters occurred through differentiation of the gene cluster EamA (DUF6) before the radiation of Viridiplantae

 

Domain halve distance (100-p)

Average distance (100-p) from EamA

Standard deviation of similarity (p) to EamA

EamA

0,6%

0,0%

0,0

TPT

3,1%

0,7%

0,7

DUF914

2,7%

1,0%

0,7

UAA

6,9%

1,3%

1,0

NST

96,6%

2,4%

2,0

  1. Divergence process table showing increasing distance between DMT-1 and DMT-2, and increasing distance to EamA. The measurements are indicated in HHsearch probability and presented as (100-p) to convert similarity to distance. The domain halve distance is reported using DMT-1 as HMM query and DMT-2 as 'database'. The standard deviation is shown because each measurement in the EamA distance column represents the average of (DMT-1 to EamA-1; DMT-1 to EamA-2; DMT-2 to EamA-1; DMT-2 to EamA-2).
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BMC Ecology and Evolution

ISSN: 2730-7182

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