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Table 6 Results of allelic association between SNPs underlying peaks of nucleotide diversity and opsin expression in 18 Lake Malawi cichlid species

From: Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes

Polymorphism distance from TSS Type MAF1 r 2 t-value P-value
SWS1 -54 C*T 0.222 -0.279 -0.911 > 0.05
SWS2B -208 C*T 0.417 < 0.001 0.003 > 0.05
SWS2B -55 1 bp indel 0.444 0.240 0.789 > 0.05
SWS2A -224* C*T 0.222 0.127 1.037 > 0.05
SWS2A -217* 8 bp indel 0.194 0.392 1.841 0.087
RH2B -308 C*G 0.167 -0.245 -0.893 > 0.05
RH2B -161 C*T 0.111 0.263 3.447 0.004
LWS -208 C*T 0.167 0.355 1.002 > 0.05
CNE-7 183 A*T 0.222 0.055 -0.673 > 0.05
CNE-7 570 C*T 0.417 0.608 2.237 0.041
SWS2B-UTR 197 A*C 0.306 0.349 1.264 > 0.05
  1. * These polymorphisms interrupt CRX transcription factor binding sites