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Table 2 Assembly statistics for the O. niloticus and M. zebra opsin-containing BACs

From: Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes

Species Opsin array Clone ID Estimated clone size (bp) Sequencing method Contig size (bp) Reads assembled (%) GenBank accession nos.
O. niloticus SWS1 T4057DH09 210,000 ABI, 454 171,838 77 K + 3 K
(95 + 49)
JF262087
  SWS2-LWS T4075AE05 184,000 ABI 171,742 3072
(85.1)
JF262088
  RH2A-RH2B T4024BG04 200,000 ABI 177,366 3072
(84.2)
JF262086
M. zebra SWS1 Mz042C6 87,000 454 77,652 79,892
(95.2)
JF262085
  SWS2-LWS Mz045P9 96,000 454 107,624 43,135
(93.8)
JF262084
  RH2A-RH2B Mz088M22 133,000 454 83,463 21,758
(94.8)
JF262089
  1. 1 Estimated clone size based on Pulsed Gel Electrophoresis.