From: A multi gene sequence-based phylogeny of the Musaceae (banana) family
Candidate gene designation | Original MusaEST (NCBI accession number) a | Blast homology | Corresponding O. sativachromosome | Homologous region on the O. sativachromosome (bp) b | Amplified successfully from the outgroup species (S. nicolai) | Intron fraction in the final alignment (%) | Aligned sequence length (bp) c | Mean GC content (%) c |
---|---|---|---|---|---|---|---|---|
g-1 | FF561021.1 | ATP:citrate lyase | Chr. 1 | 11000940 - 11002303 | yes | 81.5 | 840 [761] | 34.8 [34.6] |
g-2 | ES433688.1 | Stomatal cytokinesis defective protein | Chr. 1 | 22165522 - 22168085 | yes | 39.0 | 776 [720] | 39.4 [39.5] |
g-3 | FF558855.1 | Electron transport protein SCO1/SenC family protein | Chr. 2 | 3229271 - 3231294 | yes | 90.8 | 882 [869] | 33.3 [33.4] |
g-4 | ES437588.1 | Putative non-phototropic hypocotyl 3 (NPH3) | Chr. 2 | 21628715 - 21631333 | no | 33.5 | 529 | 62.7 |
g-5 | ES436517.1 | Endoribonuclease dicer homolog | Chr. 3 | 1177218 - 1178862 | yes | 45.3 | 890 [827] | 36.9 [37.5] |
g-6 | FF559301.1 | CASP protein-like | Chr. 3 | 28468384 - 28470215 | yes | 75.6 | 897 [863] | 37.6 [37.8] |
g-7 | FF559765.1 | Zeaxanthin epoxidase | Chr. 4 | 22349032 - 22350073 | no | 70.5 | 909 | 40.4 |
g-8 | ES437560.1 | Na/H antiporter | Chr. 5 | 2717353 - 2718249 | no | 33.2 | 487 | 47.6 |
g-9 | FF561211.1 | Protein of unknown function; DUF89 family protein | Chr. 6 | 12551039 - 12553284 | yes | 86.9 | 1045 [942] | 33.5 [33.5] |
g-10 | ES436526.1 | T-complex protein 1, eta subunit (TCP-1-eta) | Chr. 6 | 28301038 - 28302942 | no | 69.3 | 1154 | 34.1 |
g-11 | ES434922.1 | NAD+ synthase domain containing protein | Chr. 7 | 3637535 - 3641458 | yes | 54.5 | 794 [747] | 36.5 [36.3] |
g-12 | FF561580.1 | Ribosomal protein s6 RPS6-2 | Chr. 7 | 25669518 - 25671532 | no | 67.7 | 755 | 39.7 |
g-13 | FF559780.1 | mRNA capping enzyme, large subunit family protein | Chr. 8 | 4670797 - 4673706 | no | 91.2 | 1433 | 37.2 |
g-14 | FF560522.1 | Methylcrotonyl-CoA carboxylase beta chain | Chr. 8 | 20354213 - 20356265 | no | 87.8 | 767 | 34.1 |
g-15 | FF560378.1 | Annexin-like protein | Chr. 9 | 13652033 - 13655072 | no | 92.5 | 737 | 38.7 |
g-16 | ES436518.1 | Succinoaminoimidazole-carboximide ribonucleotide synthetase family protein | Chr. 9 | 17688901 - 17690929 | no | 72.0 | 587 | 36.2 |
g-17 | FF558349.1 | Methionine aminopeptidase 1 | Chr. 10 | 18996256 - 18997164 | no | 73.4 | 746 | 35.9 |
g-18 | FF559189.1 | Initiation factor 2B family protein | Chr. 10 | 12576657 - 12577797 | yes | 95.9 | 915 [915] | 34.1 [34.1] |
g-19 | ES436684.1 | DNA polymerase delta catalytic subunit | Chr. 11 | 4368226 - 4369480 | yes | 74.0 | 878 [760] | 35.4 [36.2] |