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Table 9 Pairwise comparisons between FLU and HIVb, HIVw, JTT, LG models.

From: FLU, an amino acid substitution model for influenza proteins

   

#T1 > T2

#T2 > T1

M 1

M 2

#T1 > T2

(p< .05)

(p< .05)

FLU (-F)

HIVb (-F)

655/917

454

40

FLU (-F)

HIVw (-F)

792/932

655

41

FLU (-F)

JTT (-F)

890/938

710

6

FLU (-F)

LG (-F)

921/935

868

5

FLU (+F)

HIVb (+F)

627/916

412

83

FLU (+F)

HIVw (+F)

701/932

540

78

FLU (+F)

JTT (+F)

887/912

705

3

FLU (+F)

LG (+F)

922/924

897

0

  1. T1 (T2) is the tree inferred using M1 (M2) model. #T1 > T2: the number of alignments where topologies of T1 and T2 are different and the likelihood of T1 is higher than the likelihood of T2 (the first number), and the number of alignments where topologies of T1 and T2 are different (the second number). #T1 > T2 (p < 0.05): special cases of #T1 >T2, where T1 is significantly better than T2. #T2 > T1 (p < 0.05): the same as #T1 > T2 (p < 0.5), but now T2 is significantly better than T1.