| |
LogLK/site
| |
#M1 > M2
|
#M2 > M1
|
---|
M
1
|
M
2
| |
M1 > M2
|
(p< .05)
|
(p< .05)
|
---|
FLU (-F)
|
HIVb (-F)
|
0.14
|
696
|
484
|
49
|
FLU (-F)
|
HIVw (-F)
|
0.19
|
843
|
689
|
46
|
FLU (-F)
|
JTT (-F)
|
0.17
|
926
|
731
|
10
|
FLU (-F)
|
LG (-F)
|
0.26
|
971
|
907
|
6
|
FLU (+F)
|
HIVb (+F)
|
0.12
|
674
|
437
|
89
|
FLU (+F)
|
HIVw (+F)
|
0.16
|
734
|
561
|
84
|
FLU (+F)
|
JTT (+F)
|
0.13
|
958
|
755
|
3
|
FLU (+F)
|
LG (+F)
|
0.23
|
988
|
954
|
0
|
- LogLK/site: the log likelihood difference between trees inferred using M1 and M2; a positive (negative) value means M1 is better (worse) than M2. #M1 > M2: the number of alignments among 992 alignments where M1 results in better likelihood value than M2. #M1 > M2 (p < 0.05): the number of alignments where the Kishino-Hasegawa test indicates that M1 is significantly better than M2. #M2 > M1 (p < 0.05): the same as #M1 > M2, but now M2 is significantly better than M1.