FLU, an amino acid substitution model for influenza proteins

Table 6 Comparisons of FLU and 14 other models in constructing maximum likelihood trees (+F option).

	1^st	2^nd	3^rd	4^th	5^th	6^th	7^th	8^th	9^th	10^th	11^th	12^th	13^th	14^th	15^th
FLU	635	123	202	19	5	2	2	1	2	0	1	0	0	0	0
HIVb	196	375	105	109	61	25	21	22	22	16	35	5	0	0	0
HIVw	148	146	290	73	36	41	22	11	17	56	36	93	19	3	1
JTT	6	168	218	540	23	20	9	5	1	2	0	0	0	0	0
MtREV	3	1	2	9	77	127	102	66	43	38	115	91	307	10	1
MtMam	2	4	6	7	52	62	53	60	42	62	39	92	71	343	97
WAG	1	166	124	52	33	96	146	130	89	63	55	25	12	0	0
CpREV	1	3	5	18	451	159	158	64	95	28	4	3	3	0	0
VT	0	3	11	21	34	35	46	80	83	135	73	101	206	151	13
LG	0	1	16	110	131	240	134	83	140	53	42	40	2	0	0
Dayhoff	0	1	11	19	60	93	151	227	145	147	91	28	13	5	1
Blosum62	0	1	1	3	1	2	5	11	25	20	115	192	106	203	307
DCMut	0	0	1	11	24	73	108	153	213	143	145	88	26	6	1
MtArt	0	0	0	1	3	1	5	4	4	5	12	32	137	219	569
RtREV	0	0	0	0	1	16	30	75	71	224	229	202	90	52	2

The number on the cell of model M and column p indicates the number of alignments where M model stands at the rank p over 15 models tested. For example, FLU model stands at the first rank for 635 out of 992 alignments.

ISSN: 2730-7182