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Table 1 Strains of H. lixii/T. harzianum species complex used in this study.

From: The Trichoderma harzianum demon: complex speciation history resulting in coexistence of hypothetical biological species, recent agamospecies and numerous relict lineages

     

NCBI GenBank Assession No.

 

Strain no.

Other collections

Origin

Habitat

tef1

cal1

chi18-5

 

T. harzianum*

      

hz.01**

C.P.K. 1052

DAOM231646

Kirstenbosch, South Africa

soil

AY605766

FJ577720

EF191257

hz.02

C.P.K. 1070

DAOM 222343

Ireland

commercial mushroom bed

AY605778

FJ577729

EF191265

hz.03

C.P.K. 1087

J.B.T 1244

Almonte, ON, Canada

Salix sp. wood

AY605784

FJ577733

EF191269

hz.04

C.P.K. 1093

J.B.T 2181

Labelle, PQ, Canada

dead wood

AY605787

FJ577734

EF191271

hz.05

C.P.K. 1099

DAOM 222183

Leamington, ON, Canada

wood floor of mushroom farm

AY605790

FJ577736

EF191272

hz.06

C.P.K. 1104

DAOM 176235B

Vancouver Island, Canada

on jelly fungus

AY605793

FJ577738

EF191275

hz.07

C.P.K. 204 ex-type

CBS 226.95

Sheffield, UK

garden soil

AY605833

FJ577684

AF276646

hz.08

C.P.K. 206

TUB F-477

Ural, Russia

park soil

AY605830

FJ577685

AF399269

hz.09

C.P.K. 2111

SzMC 3203

Hungary

mushroom farm

EF116562

FJ577754

EF191248

hz.10

C.P.K. 217

TUB F-690

Moscow, Russia

park soil

AY605829

FJ577686

AY605873

hz.11

C.P.K. 261

TUB F-743

Krasnoyarsk, Siberia

cultivated soil

AY605827

FJ577691

AF399270

hz.12

C.P.K. 265

TUB F-750

Vladimir, Russia

garden soil

EF113554

FJ577692

FJ623079

hz.13

C.P.K. 1116

DAOM 167088

Kananaskis, AB, Canada

alpine eutric brunisol

EF191324

FJ577742

EF191280

hz.14

C.P.K. 360

IMI 359823

North Ireland, UK

Agaricus cultivation

AY605832

FJ577701

AY605883

hz.15

J.B. RO11-1

C.P.K. 2654

Brasov, Romania

dried river bed

EF191337

FJ577767

EF191293

hz.16

C.P.K. 1818

PPRC J12

Jimma, Ethiopia

red soil

EF116558

FJ577750

FJ623101

 

Lixii subclade

      

li.01

C.P.K. 1068

DAOM 229959

Wisconsin, USA

A1 horizon, prairie soil

AY605776

FJ577727

EF191263

li.02

C.P.K. 1081

DAOM 229903

Wisconsin, USA

A1 horizon, maple forest soil

AY605782

FJ577731

EF191267

li.03

C.P.K. 1102

DAOM 222136

Campbellville, ON, Canada

commercial mushroom bed

AY605792

FJ577737

EF191274

li.04

C.P.K. 1107

DAOM 222137

Leamington, ON, Canada

commercial mushroom bed

AY605796

FJ577739

EF191276

li.05

C.P.K. 1108

DAOM 222151

Temple, PA, USA

commercial mushroom bed

AY605797

FJ577740

EF191277

li.06

C.P.K. 1110

DAOM 190830

Kingston, ON, Canada

foam insulation

EF191323

FJ577741

EF191278

li.07

C.P.K. 1720

G.J.S. 05-82

Cameroon

unknown

EF191326

FJ577747

EF191282

li.08

C.P.K. 1722

G.J.S. 05-22

Cameroon

unknown

EF191327

FJ577748

EF191283

li.09

C.P.K. 1724

G.J.S. 05-32

Cameroon

unknown

EF191328

FJ577749

EF191284

li.10

C.P.K. 588

 

Nam Lenk river, Laos

river bank soil

FJ577778

FJ577703

FJ623084

li.11

C.P.K. 838

CBS 115334

El-Fayum, Egypt

wheat field

AY605837

FJ577715

FJ623092

li.12

C.P.K. 1069

DAOM 229907

Konza Prairie, KS, USA

A1 horizon, tallgrass soil

AY605777

FJ577728

EF191264

li.13

C.P.K. 2784 ex -type

G.J.S. 97-96

Saraburi Prov., Thailand

from decayed Ganoderma sp.

FJ716622

FJ577772

FJ623107

li.14

C.P.K. 1596

W.M.J. 2317

Styria, Austria

unknown

FJ577785

FJ577744

FJ623099

li.15

C.P.K. 334

G.J.S. 98-65

Unknown

unknown

FJ577776

FJ577699

FJ623081

li.16

C.P.K. 335

G.J.S. 98-64

Unknown

unknown

FJ577777

FJ577700

FJ623082

 

Subclade II T . sp. 'afroharzianum'

      

II.01

C.P.K. 238

 

Costa Rica

maize field

AY605841

FJ577687

EF191250

II.02

C.P.K. 807

NR5555

Japan

unknown

AY605842

FJ577711

AF399263

II.03

C.P.K. 808

NR6839

Japan

unknown

AY605843

FJ577712

AF399264

II.04

C.P.K. 246

CBS 115344

Phillipines

maize field

EF191319

FJ577690

EF191253

II.05

C.P.K. 845

 

Banha, Egypt

wheat field

AY605844

FJ577716

FJ623093

II.06

C.P.K. 2618

PPRC RW14

Holleta, Ethiopia

coffe rhizosphere

FJ577788

FJ577758

FJ623103

II.07

C.P.K. 51

PPRI 3772

South Africa

unknown

AY605845

FJ577681

AY605868

II.08

C.P.K. 1061

DAOM 231421

Kigali, Rwanda

clay soil

AY605770

FJ577723

FJ623096

II.09

C.P.K. 2624

PPRC RW20

Harerge, Ethiopia

coffee rhizosphere

FJ716621

FJ577759

FJ623104

 

Subclade II a

      

IIa.01

J.B. SERB24-1

DAOM 233401

Bežanijska Kosa, Serbia

chernozem soil, corn field

EF191339

FJ577769

EF191295

IIa.02

C.P.K. 1095

DAOM 230766

Bali, Indonesia

park soil

AY605788

FJ577735

FJ623097

IIa.03

C.P.K. 274

TUB F-771

Ghaze, Nepal

forest soil

AY605834

FJ577695

AY605880

IIa.04

C.P.K. 245

CBS 115343

Costa Rica

maize field

EF191318

FJ577689

EF191252

IIa.05

C.P.K. 2710

PPRC S23

Dilla, Ethiopia

soil

FJ577790

FJ577771

FJ623106

 

Subclade III

      

III.01

C.P.K. 1075

DAOM 229908

Wisconsin, USA

A1 horizon, forest soil

EF191322

FJ577730

EF191266

III.02

C.P.K. 276

TUB F-773

Nepal

bark

AY605850

FJ577696

AY605881

III.03

C.P.K. 272

TUB F-769

Nepal

bark

AY605849

FJ577694

AY605879

III.04

C.P.K. 2301

UNISS 13b-11

Cuglieri, Sardinia

forest land

EF488114

FJ577755

EF392736

III.05

C.P.K. 2646

J.B. GA3804

Georgia, USA

unknown

EF191329

FJ577760

EF191285

III.06

J.B. RSA122

DAOM 231651

Kirstenbosch, South Africa

soil under Erica

EF191338

FJ577768

EF191294

III.07

C.P.K. 271

TUB F-768

Geirigan, Nepal

on Quercus

AY605847

FJ577693

AF399267

III.08

C.P.K. 291

TUB F-776

Ghaze, Nepal

bark of nut tree

AY605848

FJ577697

AF399265

III.09

C.P.K. 1084

DAOM 229978

Western Australia

on Eucalyptus

FJ716620

FJ577732

EF191268

III.10

J.B.PER62

DAOM 234005

Cusco, Peru

soil under Eucalyptus

EF191336

FJ577766

EF191292

III.11

C.P.K. 2673

PPRC R12

Woreda Gera, Ethiopia

coffee plantation

FJ577789

FJ577770

FJ623105

III.12

C.P.K. 2313

UNISS 13b-13

Cuglieri, Sardinia

forest area

EF488113

FJ577756

EF392737

III.13

C.P.K. 939

W.M.J. 2274

Bavaria, Germany

soil

FJ577783

FJ577718

FJ623095

III.14

C.P.K. 1935

W.M.J. 2585

Bavaria, Germany

on Fagus sylvatica

EF392741

FJ577752

EF392744

III.15

C.P.K. 1599

W.M.J. 2322

Styria, Austria

unknown

FJ577786

FJ577745

FJ623100

III.16

C.P.K. 1941

W.M.J. 2786

Lower Austria, Austria

on Sambucus nigra

EF392742

FJ577753

EF392745

III.17

C.P.K. 1934

W.M.J. 2545

Lower Austria, Austria

on Fagus sylvatica

EF392740

FJ577751

EF392743

 

Subclade IV

      

IV.01

C.P.K. 590

 

Atherton, Australia

rhizosphere

EF191320

FJ577704

EF191254

IV.02

C.P.K. 693

TUB F-961***

Beijing, China

park soil

AY857271

FJ577707

FJ623087

IV.03

J.B. NZ1-2

DAOM 233825

Urupakapaka, New Zealand

soil under Leptospermum

EF191330

FJ577761

EF191286

IV.04

J.B. NZ7-2

DAOM 233821

Mt. Pureora, New Zealand

soil

EF191332

FJ577763

EF191288

IV.05

C.P.K. 2610

PPRC RW6

Bako, Ethiopia

coffee rhizosphere

FJ577787

FJ577757

FJ623102

IV.06

C.P.K. 53

PPRI 3909

South Africa

unknown

EF113551

FJ577682

EF191249

IV.07

C.P.K. 1044

DAOM 231412

Kigali, Rwanda

sandy clay cultivated soil

AY605764

FJ577719

EF191255

IV.08

C.P.K. 1058

DAOM 231435

Kigali, Rwanda

parkland soil

EF191321

FJ577721

EF191258

 

Subclade V

      

V.01

C.P.K. 1065

DAOM 231405

Isla Mujeres, Q.R., Mexico

sandy soil

AY605774

FJ577725

EF191261

V.02

C.P.K. 646

TUB F-613***

Hookena, Hawai

decaying grass

FJ577780

FJ577706

FJ623086

V.03

C.P.K. 727

TUB F-1082***

Trivandrum, India

plant debris

FJ577781

FJ577709

FJ623088

V.04

C.P.K. 743

TUB F-1236***

Embudu, Maldives

dead bark

FJ577782

FJ577710

FJ623089

V.05

C.P.K. 1059

DAOM 231425

Cancun, Q.R., Mexico

plant soil

EF605768

FJ577722

EF191259

 

Subclade X'/no clade

      

X.01

C.P.K. 836

 

El-Fayum, Egypt

cotton field

AY605838

FJ577713

FJ623090

X.02

C.P.K. 837

CBS 115333

El-Fayum, Egypt

maize field

AY605839

FJ577714

FJ623091

X.03

C.P.K. 1505

UNISS10.5M

Aoujeft, Mauritania

soil

FJ577784

FJ577743

FJ623098

X.04

C.P.K. 3408****

 

Papua New Guinea

deep sea sediment

FJ577791

FJ577773

FJ623108

X.05

C.P.K. 3409****

 

Papua New Guinea

deep sea sediment

FJ577792

FJ577774

FJ623109

X.06

J.B. NZ11-1

DAOM 233829,

Kichappes, New Zealand

soil

EF191333

FJ577764

EF191289

X.07

J.B. NZ2-4

DAOM 233823

Urupakapaka, New Zealand

soil under tree fern

EF191331

FJ577762

EF191287

X.08

C.P.K. 596

 

Victoria, Brazil

soil

FJ577779

FJ577705

FJ623085

X.09

C.P.K. 709

TUB F-1035

Iguazo Falls, Brazil

tropical rain forest

AY605851

FJ577708

AY605884

X.10

C.P.K. 878

Z.D. 57

Iran

soil

AY602977

FJ577717

FJ623094

X.11

C.P.K. 1066

DAOM 231402

Kaua village, Q.R., Mexico

garden soil

AY605775

FJ577726

EF191262

X.12

C.P.K. 1717

G.J.S. 05-62

Vietnam

unknown

EF191325

FJ577746

EF191281

X.13

C.P.K. 1064

DAOM 231408

Chichen Itza, Q.R., Mexico

forest soil

AY605773

FJ577724

EF191260

X.14

J.B. PER1-2

DAOM 233966

Iquitos, Peru

soil

EF191334

FJ577765

EF191290

X.16

C.P.K. 239

CBS 115342

Costa Rica

maize field

EF191317

FJ577688

EF191251

X.17

C.P.K. 333

G.J.S. 91-159

unknown

unknown

FJ577775

FJ577698

FJ623080

 

T. inhamatum

      

X.15

C.P.K. 202 ex-type

CBS 273.78

Villavicenco, Colombia

maize field soil

AY605853

FJ577683

AF399271

  1. Strains used in this work were either obtained by one of the authors, or taken from previous published work [cf. refs. [11, 13, 1619] and citations therein]. "Other collection" names are names that have been used for these isolates in earlier papers. * corresponds to species or clades revealed in this study; ** strain code used in Figures 1 and 2; *** strains obtained in the course of a bilateral research project between TU Vienna to C.P.K. and the Technical University of Budapest (Hungary) to George Szakacs; **** only DNA material available, supplied by Katja Fisch (University of Bonn, Germany); bold font highlights strains isolated from teleomorphs;