|
Name1
|
Start2
|
End3
|
Str4
|
Chr5
|
Loc6
|
Ex7
|
P/D8
|
Ka/Ks9
|
LRT10
|
FS11
|
SC12
|
aa13
|
|---|
|
CCT1-1P
|
19,986,638
|
19,987,216
|
+
|
12
|
p12.2
|
1
|
P
|
0.75
|
0.16
|
5
|
2
|
190
|
|
CCT1-2P
|
41,621,756
|
41,623,646
|
-
|
5
|
p13.1
|
2?
|
D
|
1.21
|
0.15
|
7
|
5
|
512
|
|
CCT1-3P14
|
42,801,030
|
42,802,033
|
+
|
7
|
p14.1
|
3
|
D
|
0.68
|
2.10
|
1
|
1
|
367
|
|
CCT3-1P
|
16,177,578
|
16,178,178
|
+
|
8
|
p22
|
1
|
P
|
1.02
|
0.0
|
2
|
2
|
159
|
|
CCT4-1P
|
64,177,578
|
64,409,590
|
+
|
X
|
q12
|
3
|
D
|
0.65
|
1.76
|
0
|
3
|
512
|
|
CCT4-2P
|
140,344,301
|
140,345,787
|
-
|
7
|
q34
|
4
|
D
|
0.82
|
1.24
|
2
|
10
|
278
|
|
CCT5-1P14,15
|
78,382,086
|
78,382,680
|
+
|
13
|
q31.1
|
1
|
P
|
0.81
|
0.20
|
3
|
4
|
549
|
|
CCT5-2P15
|
78,382,866
|
78,382,967
|
-
|
13
|
q31.1
|
1
|
?
|
-
|
-
|
-
|
1
|
34
|
|
CCT5-3P
|
114,876,388
|
114,877,290
|
+
|
5
|
q22.3
|
1
|
P
|
0.25
|
2.12
|
6
|
3
|
201
|
|
CCT6-1P
|
14,692,965
|
14,693,954
|
-
|
5
|
p15.2
|
1
|
P
|
1.00
|
0.0
|
2
|
2
|
330
|
|
CCT6-2P
|
109,013,584
|
109,014,117
|
-
|
11
|
q22.3
|
1
|
P
|
0.90
|
0.0
|
0
|
2
|
178
|
|
CCT6-3P16
|
64,162,812
|
64,171,325
|
+
|
7
|
q11.21
|
8
|
D
|
0.43
|
3.06
|
5
|
4
|
289
|
|
CCT6-4P
|
191,915,332
|
191,916,879
|
+
|
3
|
q28
|
1
|
P
|
0.57
|
6.90**
|
9
|
4
|
292
|
|
CCT6-5P14,16
|
64,853,564
|
64,865,440
|
+
|
7
|
q11.21
|
10
|
D
|
0.84
|
0.34
|
12
|
6
|
399
|
|
CCT7-1P14
|
92,251,627
|
92,307,366
|
-
|
5
|
q15
|
1
|
P
|
0.45
|
1.88
|
3
|
5
|
145
|
|
CCT7-2P
|
150,242,815
|
150,243,240
|
+
|
6
|
q25.1
|
1
|
P
|
0.87
|
0.10
|
3
|
4
|
552
|
|
CCT8-1P14
|
145,141,482
|
145,143,137
|
-
|
1
|
q21.1
|
1
|
P
|
1.14
|
0.10
|
2
|
3
|
561
|
|
HSPD1-1P14
|
135,744,902
|
135,745,039
|
-
|
5
|
q31.1
|
1
|
P
|
1.46
|
0.27
|
0
|
0
|
48
|
|
HSPD1-2P14,17
|
21,919,402
|
21,920,175
|
-
|
5
|
p14.3
|
1
|
P
|
0.90
|
0.10
|
1
|
1
|
264
|
|
HSPD1-3P
|
43,602,029
|
43,602,280
|
-
|
20
|
q13.12
|
4
|
D
|
-
|
-
|
0
|
1
|
84
|
|
HSPD1-4P
|
88,065,673
|
88,066,269
|
+
|
6
|
q15
|
1
|
P
|
0.55
|
1.08
|
4
|
5
|
199
|
|
HSPD1-5P14
|
55,191,053
|
55,192,769
|
+
|
12
|
q13.2
|
1
|
P
|
0.56
|
3.08
|
2
|
1
|
499
|
|
HSPD1-6P14
|
36,783,612
|
36,785,195
|
-
|
3
|
P22.3
|
1
|
P
|
0.59
|
2.46
|
2
|
2
|
443
|
|
HSPD1-7P18
|
7,263,938
|
7,265,475
|
+
|
8
|
p23.1
|
1
|
P
|
1.12
|
0.18
|
5
|
4
|
396
|
|
HSPD1-8P
|
145,986,418
|
145,987,946
|
+
|
4
|
q31.21
|
1
|
P
|
0.63
|
2.32
|
4
|
3
|
458
|
|
HSPD1-9P18
|
7,785,932
|
7,787,502
|
-
|
8
|
p23.1
|
1
|
P
|
0.91
|
0.08
|
5
|
3
|
416
|
|
HSPD1-10P
|
8,058,884
|
8,082,857
|
+
|
12
|
p13.31
|
2?
|
D
|
0.78
|
0.94
|
1
|
1
|
307
|
|
HSPD1-11P
|
95,130,459
|
95,132,169
|
+
|
5
|
q15
|
5
|
D
|
0.74
|
2.44
|
6
|
6
|
375
|
|
HSPD1-12P
|
78,321,372
|
78,323,341
|
+
|
13
|
q31.1
|
1
|
P
|
0.62
|
4.98*
|
5
|
4
|
410
|
|
HSPD1-13P
|
153,068,626
|
153,068,943
|
+
|
6
|
q25.2
|
1
|
P
|
0.54
|
2.84
|
1
|
2
|
108
|
|
HSPD1-14P14
|
37,465,288
|
37,466,827
|
-
|
13
|
q13.3
|
4
|
D
|
0.68
|
3.3
|
6
|
3
|
361
|
|
HSPD1-15P
|
19,269,394
|
19,270,353
|
+
|
5
|
p14.3
|
4
|
D
|
0.74
|
1.24
|
4
|
4
|
241
|
|
HSPD1-16P
|
105,082,802
|
105,083,755
|
+
|
11
|
q22.3
|
2?
|
D
|
0.51
|
6.24*
|
5
|
4
|
199
|
|
HSPD1-17P
|
34,077,070
|
34,078,293
|
+
|
1
|
p35.1
|
3
|
D
|
0.74
|
1.48
|
2
|
2
|
217
|
|
HSPD1-18P
|
56,105,684
|
56,108,736
|
+
|
20
|
q13.32
|
5
|
D
|
0.48
|
10.84**
|
3
|
2
|
299
|
|
HSPD1-19P
|
50,318,868
|
50,319,008
|
+
|
10
|
q11.23
|
1
|
?
|
2.42
|
0.72
|
0
|
0
|
47
|
|
HSPD1-20P
|
78,924,341
|
78,924,478
|
-
|
12
|
q21.31
|
1
|
?
|
0.40
|
3.08
|
0
|
0
|
46
|
|
HSPD1-21P
|
60,994,430
|
60,994,876
|
-
|
5
|
q12.1
|
6
|
D
|
-
|
-
|
0
|
6
|
155
|
|
HSPD1-22P
|
29,181,851
|
29,183,334
|
-
|
21
|
q21.3
|
2?
|
D
|
0.69
|
1.4
|
3
|
4
|
344
|
- 1Pseudogene names follow the HUGO nomenclature. They are composed of the name of the parental gene followed by a unique number identifier and the suffix "P" (Pseudogene); 2Start and 3 End positions of the pseudogene on the chromosome; 4Strand; 5Chromosome; 6Location on the chromosome; 7Number of exons. A question mark indicates gene fragments with uncertain numbers of exons; 8Processed (P), duplicated (D) or undetermined (?); 9Ratio of non-synonymous vs. synonymous substitution rates; 10Likelihood Ratio Test (LRT) values. Values different from 1.0 with probability p < 0.01 (**) or p < 0.05 (*) are shown in bold-face; 11Number of Frame-Shifts recognized in the coding region of the pseudogene; 12Number of in-frame Stop Codons recognized in the coding region of the pseudogene; 13Length in amino acids of pseudo-translation of the recognized pseudogene sequence; 14Ten pseudogenes previously reported in the Ensembl (roman), Pseudogene.org (italics) or NCBI (bold) databases: CCT1-3P = OTTHUMG00000033751; CCT5-1P = Human.chr13.mb78; CCT6-5P = ENSP00000275603, Human.chr7.mb64; CCT7-1P = ENST00000399032; CCT8-1P = Human.chr1.mb145; HSPD1-1P = ENSG00000162241, Human.chr5.mb135; HSPD1-2P = ENSP00000328369; HSPD1-5P = LOC644745; HSPD1-6P = LOC645548; HSPD1-14P = OTTHUMG00000016753; 15,16,18Tandemly duplicated;17Previously identified as Hsp60s2 (Hsp60 short form 2).
