Microevolutionary dynamics of a macroevolutionary key innovation in a Lepidopteran herbivore

Heidel-Fischer, Hanna M; Vogel, Heiko; Heckel, David G; Wheat, Christopher W

doi:10.1186/1471-2148-10-60

BMC Ecology and Evolution

Table 2 Summary statistics of Pieris rapae genes for individual and grouped populations.

From: Microevolutionary dynamics of a macroevolutionary key innovation in a Lepidopteran herbivore

			coding							whole gene			non coding
Gene		n	bp	πall	θall	S	πss	πns	ns/ss	bp	π	θ	bp	πall	θall
	DE	20		0.0108	0.00902	19	0.02182	0.00769	0.347378		0.02013	0.01823		0.0405	0.03938
*Pra* NSP-	FR	20		0.0093	0.00795	17	0.02121	0.00593	0.275416		0.0164	0.01326		0.02925	0.02542
D2	IT	20		0.01042	0.00723	15	0.02307	0.00684	0.292393		0.01689	0.01209		0.02858	0.02087
	US	20		0.01145	0.00854	18	0.02783	0.00683	0.240799		0.01783	0.01319		0.02951	0.02342
	total	80	594	0.01093	0.01054	31	0.02473	0.00703	0.27995	943	0.01722	0.01797	349	0.03159	0.03494
	DE	20		0.00739	0.00732	12	0.01476	0.00531	0.356045		0.01337	0.01335		0.02735	0.02759
*Pra* NSP-	FR	20		0.0062	0.00671	11	0.01262	0.00437	0.342969		0.01241	0.01335		0.02665	0.02759
D3	IT	20		0.00562	0.00549	9	0.01159	0.00392	0.335038		0.01247	0.01092		0.02809	0.02519
	US	20		0.00538	0.00549	9	0.0153	0.00256	0.16538		0.01114	0.0105		0.02444	0.02269
	total	80	462	0.00642	0.00918	21	0.01419	0.00422	0.294649	706	0.01255	0.01537	244	0.02681	0.03279
	DE	20		0.00459	0.00613	9	0.01723	0.00084	0.048752176
	FR	18		0.00422	0.00492	7	0.01062	0.00233	0.219397363
IDH	IT	18		0.00155	0.00281	4	0.00562	0.00035	0.06227758
	US	18		0.00394	0.00524	7	0.01144	0.00174	0.152097902
	total	74	291	0.00365	0.00755	15	0.01163	0.00131	0.112639725
	DE	18		0.0042	0.00496	6	0.01564	0.00042	0.02685422
	FR	20		0.00302	0.0016	2	0.01217	0	0
Ga3pdh	IT	18		0.00743	0.00743	9	0.01781	0.00042	0.023582257
	US	18		0.00418	0.00248	3	0.01684	0	0
	total	74	352	0.00444	0.00583	10	0.0173	0.00021	0.012138728
	DE	8		0.0079	0.00715	14	0.03026	0.00075	0.024785195
	FR	8		0.01003	0.01022	20	0.03865	0.00088	0.022768435
COI	IT	8		0.00629	0.00715	14	0.02595	0	0
	US	7		0.00164	0.00162	3	0.03026	0.00075	0.024785195
	total	31	755	0.00691	0.00963	28	0.02611	0.00076	0.029107622
	DE	12		0.00321	0.00637	5	0.01246	0.00081	0.064669
Arg	FR	20		0.00077	0.00217	2	0.00187	0.00081	0.259259
Kinase	IT	20		0.00219	0.00434	4	0.00876	0.00049	0.054933
	US	14		0.00156	0.00242	2	0.0076	0	0
	total	66	260	0.00182	0.00566	7	0.00719	0.00043	0.058823
	DE	20		0.01778	0.01603	12	0.06822	0.00127	0.017609
	FR	18		0.01208	0.01378	10	0.04898	0	0
Wingless	IT	18		0.01344	0.01102	8	0.05456	0	0
	US	18		0.01159	0.01102	8	0.04487	0.0007	0.015164
	total	74	211	0.01395	0.01556	16	0.05503	0.00051	0.008987

Shown are the number of sequences (n), the number of base pairs (bp), the average pairwise differences (π), the pairwise differences for synonymous and nonsynonymous sites (π_ss and π_ns), θw, the number of segregating sites (S) and the rate of nonsynonymous to synonymous substitutions for the coding part of the genes. If introns are included in the sequence, the number of base pairs, the average pairwise differences and θw is given separately for the whole gene and the non coding part.

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ISSN: 2730-7182

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