Table 4 Summary of all the functional categories of the proteins shared by Acinetobacter plasmids and chromosomes.
From: Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome
Functional category | A. baumannii ATCC17978 | A. baumannii AYE | A. baumannii SDF | A. baumannii AB0057 | A. baumannii AB307 | A. baumannii ACICU | Acinetobacter. sp. ADP1 | Total |
|---|---|---|---|---|---|---|---|---|
Transposases | 4 | 0 | 279 | 3 | 0 | 2 | 0 | 288 |
No Pfam hits | 5 | 8 | 7 | 13 | 8 | 14 | 4 | 61 |
Uncharcterized/others | 7 | 5 | 0 | 3 | 0 | 7 | 4 | 26 |
Cold-shock DNA-binding domain | 2 | 4 | 1 | 3 | 4 | 2 | 3 | 19 |
Integrase | 1 | 3 | 0 | 3 | 0 | 9 | 0 | 16 |
Zinc-binding dehydrogenase | 1 | 2 | 1 | 2 | 2 | 2 | 2 | 12 |
Nucleoside recognition | 3 | 1 | 1 | 1 | 1 | 1 | 1 | 9 |
ABC transporter | 0 | 1 | 1 | 2 | 1 | 1 | 1 | 7 |
H-NS histone family | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 7 |
Penicillin binding protein transpeptidase domain | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 7 |
Mer-related protein | 0 | 4 | 0 | 2 | 0 | 0 | 0 | 6 |
Haloacid dehalogenase-like hydrolase | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 6 |
Cation efflux family | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 6 |
regulatory proteins tetR-like | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 6 |
Catalase | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 5 |
Secretory lipase | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 5 |
AraC-like ligand binding domain | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 5 |
Resolvase | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 2 |
Proteins shared with plasmids at 50% identity | 31 | 36 | 296 | 41 | 24 | 46 | 17 | 493 |