Skip to main content

Table 3 Clusters of proteins exhibiting a link at 100% and/or 50% sequence identity.

From: Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

   N° of nodes in the protein cluster
Protein cluster Function 50% 100%
1 Transposase 13 9
2 Transposase 4 3
3 Transposase 3 2
4a Transposase 6 3
4b    3
5 Transposase 2 2
6a Resolvase 8 4
6b    2
7 Resolvase 2  0
8 Integrase 2 2
9 Mob 2  0
10 MobS-like 4  0
11 MerC 7 7
12 Mercuric ion transport 8 8
13a Mercuric ion transport 8 5
13b    2
14 MerD 8 7
15 Mercuric ion reduction 8 5
16 MerE 8 8
17 MerE-like protein 8 7
18a MerR 8 5
18b    2
19 DNA replication 11 4
20 DNA replication 3  0
21 DNA replication 2 3
22 DNA replication 4  0
23 Transcription regulator 5 3
24 TonB dependent receptor protein 4 2
25 Inner membrane protein 6 3
26 Cro-like protein 6 2
27a Sel-1 related protein 7 4
27b    3
28 Cytotoxic transcription repressor 2  0
29 Diaminopimelate decarboxylase 7 2
30 Cation efflux system 2  0
31 Oxacillinase 3 3
32 AraC 3  0
33 Hypothetical protein 2  0
34 Hypothetical protein 2 2
35 Hypothetical protein 2 2
36 Hypothetical protein 3  0
37 Hypothetical protein 2  0
38 Hypothetical protein 8  0
39 Hypothetical protein 3 3
40 Hypothetical protein 2  0
41 Hypothetical protein 4 4
42 Hypothetical protein 3  0
43 Hypothetical protein 2 2
44 Hypothetical protein 2 2
45 Hypothetical protein 2 2
46 Hypothetical protein 2 2
Total nodes   213 133