Skip to main content

Table 1 List of completely sequenced Acinetobacter plasmids and chromosomes used in this work.

From: Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

Strains Plasmids Chromosomes
Species and/or designation Origin n. Name A.N. Length (bp) ORF(s) n. Length (bp) A.N. ORF(s)
Acinetobacter baumannii Clin. 1 pABIR NC_010481 29823 26 n.d.    
Acinetobacter baumannii ATCC19606T Clin. 1 pMAC NC_006877 9540 11 n.d.    
 Acinetobacter baumannii Clin. 1 pAB02 AY228470 4162 6 n.d.    
Acinetobacter baumannii ACICU Clin. 2 pACICU1 NC_010605 28279 28 1 3904116 NC_010611 3667
    pACICU2 NC_010606 64366 64     
Acinetobacter baumannii ATCC 17978 Clin. 2 pAB1 NC_009083 13408 11 1 3976747 NC_009085 3351
    pAB2 NC_009084 11302 5     
Acinetobacter baumannii AYE Clin. 4 p1ABAYE NC_010401 5644 7 1 3936291 NC_010410 3607
    p2ABAYE NC_010402 9661 11     
    p3ABAYE NC_010403 94413 82     
    p4ABAYE NC_010404 2726 5     
Acinetobacter baumannii SDF Body lice 3 p1ABSDF NC_010395 6106 8 1 3421954 NC_010400 2913
    p2ABSDF NC_010396 25014 30     
    p3ABSDF NC_010398 24922 24     
Acinetobacter baumannii AB0057 Clin. 1 pAB0057 NC_011585 8729 11 1 4050513 NC_010410 3790
Acinetobacter baumannii AB307-0294 Clin. 0      1 3760981 NC_011595 3451
Acinetobacter sp. EB104 Unknown 1 pAC450 NC_002760 4379 4 n.d.    
Acinetobacter sp. SUN Clin. 1 pRAY NC_000923 6076 10 n.d.    
Acinetobacter venetianus Env. 2 pAV1 NC_010309 10820 11 n.d.    
    pAV2 NC_010310 15135 16     
Acinetobacter sp LUH5605 Env. 1 Ptet5605 AY228470 3727 4 n.d.    
Acinetobacter sp BW3 Env. 1 pKLH207 AJ486856 9910 16 n.d.    
Acinetobacter calcoaceticus KHW14 Env. 1 pKLH201 AJ251307 11191 14 n.d.    
Acinetobacter calcoaceticus KHP18 Env. 1 pKLH2 AF213017 6838 12 n.d.    
Acinetobacter sp ED23-35 Env. 1 pKLH208 AJ251272 9435 15 n.d.    
Acinetobacter sp ED45-25 Env. 1 pKLH205 AJ459234 8561 13 n.d.    
Acinetobacter junii Env. 1 pKLH203 AJ486855 7195 12 n.d.    
Acinetobacter sp LS56-7 Env. 1 pKLH204 AJ487050 9489 15 n.d.    
Acinetobacter lwoffii Env. 1 pKLH202 AJ486857 9471 17 n.d.    
Acinetobacter sp YAA* Env. 1 pYA1 D86080 7407 5 n.d.    
Acinetobacter baylyi ADP1 Env. 0      1 3598621 NC_005966 3307
Tot.   29     493 7    24086
  1. Sequences were downloaded from the NCBI web-site http://www.ncbi.nlm.nih.gov/genomes/genlist.cgi?taxid=2&type=1&name=Bacteria%20Complete%20Chromosomes and from the FTP repository ftp://ftp.ncbi.nih.gov/refseq/release/plasmid/ (as on 31st March 2009 ). N.d. "not determined", A.N. "accession number".
  2. * These plasmids were retrieved in strains lacking a clear taxonomical affiliation [56, 57]