Skip to main content

Table 4 Summary of lineage-specific positive selection detected.

From: Positive selection neighboring functionally essential sites and disease-implicated regions of mammalian reproductive proteins

Species tested as Foreground

Significant LRT

Parameter estimates

  

P

Fwd ω

Bck ω

Adam2

    

Macaque

ModelA v M1

9.57%

1.71

0.10/1

Catsper1 Mammals

    

Ferungulata

ModelA v M1

4.46%

998.99

0.09/1

Rodents

ModelA v M1

5.45%

999.00

0.084/1

 

ModelB v m3Discrtk2

4.47%

999.00

0.12/1.38

Col1a1

    

Rodents

ModelA v M1

2.17%

72.73

0.013/1

 

ModelB v m3Discrtk2

1.93%

72.77

0.02/1.35

PH-20

    

Guinea Pig

ModelA v M1

6.3%

11.48

0.13/1

 

ModelB v m3Discrtk2

6.14%

12.57

0.14/1.10

Prkar2a

    

Macaque

ModelA v M1

2.37%

999.00

0.04/1

 

ModelB v m3Discrtk2

2.53

999.00

0.04/1.22

Sp56

    

Human

ModelB v m3Discrtk2

100%

62.40015

0.02/0.55

Glires

ModelB v m3Discrtk2

2.56%

1.03

0.02/0.55

  1. Summary table of significant results for lineages specific analyses following LRT analyses. Lineages tested as foreground (Fwd) are shown in the first column. Only those lineages with significant LRT values for Model B or Model A and ω >1 are shown here. Parameter estimates are given for the LRT values highlighted in bold. P is the proportion of sites under selection the corresponding selective pressure as measured by ω. Fwd ω and Bck ω scores for the foreground species and background species respectively are given in the final column.