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Table 1 Overview on amphioxus globin genes

From: The globin gene family of the cephalochordate amphioxus: implications for chordate globin evolution

globin

gene designation (Brafl genome V2.0)

alternative haplotype (Brafl genome version 1.0)

identity/similarity of haplotype proteins

EST data

RT-PCR confirmation of CDS

    

Acc.no. GenBank

expression

Acc.no. GenBank

coverage of CDS

BflGb1

BRAFLDRAFT_98913 [GeneID:7251500]

BRAFLDRAFT_92353

98.5/99.5%

-

-

FN773089

complete

BflGb2

BRAFLDRAFT_98914 [GeneID:7251501]

BRAFLDRAFT_92354

95.9/97.3%

-

-

FN773090

complete

BflGb3

BRAFLDRAFT_99970 [GeneID:7252875]

BRAFLDRAFT_72350

99.4/100%

-

-

FN773091

partial

BflGb4

BRAFLDRAFT_74626 [GeneID:7236365]

BRAFLDRAFT_84888

97.9/98.9%

-

-

FN773092

complete

BflGb5

BRAFLDRAFT_96953 [GeneID:7248969]

BRAFLDRAFT_110609

97.8/98.9%

BW852078

neurula whole animal

FN773093

complete

BflGb6

BRAFLDRAFT_74265 [GeneID:7230831]

BRAFLDRAFT_96513

100/100%

-

-

FN773094

partial

BflGb7

not annotated in database

not annotated in database

-

BW695259

adult whole animal

FN773095

complete

    

BW701618

adult whole animal

  
    

BW702763

adult whole animal

  
    

BW704772

adult whole animal

  

BflGb8

BRAFLDRAFT_92393 [GeneID:7215786]

BRAFLDRAFT_92377

97.6/99.4%

  

FN773096

partial

BflGb9

BRAFLDRAFT_96956 [GeneID:7250575]

not annotated in database

-

BW696096

adult whole animal

FN773097

complete

    

BW700672

adult whole animal

  

BflGb10

BRAFLDRAFT_118076 [GeneID:7214470]

BRAFLDRAFT_132915

97.2/98.6%

BW717063

adult whole animal

FN773098

complete

    

BW695770

adult whole animal

  
    

BW698433

adult whole animal

  

BflGb11

BRAFLDRAFT_127451 [GeneID:7247920]

BRAFLDRAFT_133418

98.6/99.3%

BW709730

adult whole animal

FN773099

complete

    

BW700901

adult whole animal

  
    

BW706678

adult whole animal

  
    

BW695940

adult whole animal

  
    

BW720248

adult whole animal

  
    

BW721930

adult whole animal

  
    

BW709489

adult whole animal

  
    

BW717166

adult whole animal

  
    

BW693523

adult whole animal

  
    

BW692993

adult whole animal

  
    

BW710133

adult whole animal

  
    

BW699215

adult whole animal

  
    

BW698534

adult whole animal

  
    

BW709034

adult whole animal

  
    

BW701461

adult whole animal

  
    

BW703104

adult whole animal

  
    

AU234573

notochord (B. belcheri)

  

BflGb12

BRAFLDRAFT_74222 [GeneID:7230826]

not annotated in database

-

-

-

FN773100

partial

BflGb13

BRAFLDRAFT_66937 [GeneID:7219951]

BRAFLDRAFT_111239

98.9/100%

-

-

FN773101

complete

BflGb14

BRAFLDRAFT_77082 [GeneID:7215245]

not annotated in database

-

-

-

FN773102

complete

BflGb15

BRAFLDRAFT_90360 [GeneID:7213766]

BRAFLDRAFT_90367

98.6/99.3%

-

-

FN773103

complete

  1. Gene models, corresponding haplotypes, identities and similarities of haplotype proteins, nucleotide evolution rates of haplotypes, evidence for gene expression by ESTs and accession numbers of cDNA sequences are listed.